Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G76860 - ( small nuclear ribonucleoprotein putative / snRNP putative / Sm protein putative )
35 Proteins interacs with AT1G76860Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G49010 | Predictedtwo hybrid | FSW = 0.0029
| Class C:nucleus | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G20960 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationinteraction prediction | FSW = 0.2707
| Class C:nucleus | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G12780 | PredictedProtein-RNA | FSW = 0.1492
| Class C:nucleus | PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE |
AT2G43810 | Predictedinteraction predictionAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridAffinity Capture-MSinterologs mapping | FSW = 0.2073
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT1G76300 | Predictedtwo hybrid | FSW = 0.0262
| Class C:nucleus | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT5G27720 | Predictedinteraction predictionin vitroAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mappingCo-expression | FSW = 0.2456
| Class C:nucleus | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT4G30330 | Predictedtwo hybridAffinity Capture-MStwo hybrid | FSW = 0.3576
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
AT1G03330 | PredictedAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction predictionCo-expression | FSW = 0.4741
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
AT1G21190 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5120
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G47640 | PredictedPhylogenetic profile method | FSW = 0.2342
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT1G28060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3158
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
AT3G12810 | PredictedAffinity Capture-MS | FSW = 0.0197
| Class C:nucleus | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G14080 | Predictedin vitroAffinity Capture-MS | FSW = 0.1616
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G59810 | Predictedin vitroAffinity Capture-MS | FSW = 0.4286
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT1G19120 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-WesternCo-purificationinterologs mappingin vitrointeraction predictionCo-expression | FSW = 0.2329
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G03870 | Predictedinteraction predictiontwo hybridtwo hybridin vitroAffinity Capture-MStwo hybridtwo hybridColocalizationAffinity Capture-MSin vitroPhylogenetic profile methodCo-expression | FSW = 0.3183
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT4G30220 | PredictedAffinity Capture-RNA | FSW = 0.3410
| Class C:nucleus | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
AT1G65700 | Predictedin vitroGene neighbors methodCo-expression | FSW = 0.1674
| Class C:nucleus | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G48870 | Predictedinteraction predictionin vitroAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridinterologs mappingCo-expression | FSW = 0.4636
| Class C:nucleus | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
AT2G41500 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2791
| Class C:nucleus | EMB2776 NUCLEOTIDE BINDING |
AT5G58850 | Predictedtwo hybrid | FSW = 0.0239
| Class C:nucleus | MYB119 (MYB DOMAIN PROTEIN 119) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G00540 | Predictedinteraction prediction | FSW = 0.0239
| Class C:nucleus | ATMYB3R2 (MYB DOMAIN PROTEIN 3R2) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G16630 | Predictedtwo hybrid | FSW = 0.0612
| Unknown | RAD4 DAMAGED DNA BINDING |
AT3G59040 | Predictedinteraction prediction | FSW = 0.0191
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT2G33340 | PredictedCo-purification | FSW = 0.1581
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G80070 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2597
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT1G04020 | Predictedtwo hybrid | FSW = 0.0294
| Unknown | BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR |
AT1G60170 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.3518
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
AT5G41770 | PredictedAffinity Capture-MS | FSW = 0.1319
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT2G29210 | Predictedtwo hybrid | FSW = 0.0211
| Unknown | SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN |
AT4G03430 | PredictedAffinity Capture-MS | FSW = 0.2152
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT5G13570 | PredictedAffinity Capture-MS | FSW = 0.1060
| Unknown | DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION |
AT5G16640 | Predictedtwo hybrid | FSW = 0.0175
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G75660 | PredictedAffinity Capture-MStwo hybridCo-expression | FSW = 0.0150
| Unknown | XRN3 5-3 EXORIBONUCLEASE |
AT5G15770 | Predictedinteraction predictioninterologs mapping | FSW = 0.1674
| Unknown | ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454