Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G76860 - ( small nuclear ribonucleoprotein putative / snRNP putative / Sm protein putative )

35 Proteins interacs with AT1G76860
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G49010

Predicted

two hybrid

FSW = 0.0029

Class C:

nucleus

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G20960

Predicted

Affinity Capture-MS

Affinity Capture-MS

Co-purification

interaction prediction

FSW = 0.2707

Class C:

nucleus

EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G12780

Predicted

Protein-RNA

FSW = 0.1492

Class C:

nucleus

PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE
AT2G43810

Predicted

interaction prediction

Affinity Capture-MS

two hybrid

Affinity Capture-MS

two hybrid

Affinity Capture-MS

interologs mapping

FSW = 0.2073

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G76300

Predicted

two hybrid

FSW = 0.0262

Class C:

nucleus

SMD3 (SNRNP CORE PROTEIN SMD3)
AT5G27720

Predicted

interaction prediction

in vitro

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

interologs mapping

Co-expression

FSW = 0.2456

Class C:

nucleus

EMB1644 (EMBRYO DEFECTIVE 1644)
AT4G30330

Predicted

two hybrid

Affinity Capture-MS

two hybrid

FSW = 0.3576

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT1G03330

Predicted

Affinity Capture-MS

two hybrid

two hybrid

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

interaction prediction

Co-expression

FSW = 0.4741

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT1G21190

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.5120

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G47640

Predicted

Phylogenetic profile method

FSW = 0.2342

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT1G28060

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.3158

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN
AT3G12810

Predicted

Affinity Capture-MS

FSW = 0.0197

Class C:

nucleus

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G14080

Predicted

in vitro

Affinity Capture-MS

FSW = 0.1616

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G59810

Predicted

in vitro

Affinity Capture-MS

FSW = 0.4286

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G19120

Predicted

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-Western

Co-purification

interologs mapping

in vitro

interaction prediction

Co-expression

FSW = 0.2329

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT2G03870

Predicted

interaction prediction

two hybrid

two hybrid

in vitro

Affinity Capture-MS

two hybrid

two hybrid

Colocalization

Affinity Capture-MS

in vitro

Phylogenetic profile method

Co-expression

FSW = 0.3183

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G30220

Predicted

Affinity Capture-RNA

FSW = 0.3410

Class C:

nucleus

RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
AT1G65700

Predicted

in vitro

Gene neighbors method

Co-expression

FSW = 0.1674

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G48870

Predicted

interaction prediction

in vitro

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

two hybrid

interologs mapping

Co-expression

FSW = 0.4636

Class C:

nucleus

SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING
AT2G41500

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2791

Class C:

nucleus

EMB2776 NUCLEOTIDE BINDING
AT5G58850

Predicted

two hybrid

FSW = 0.0239

Class C:

nucleus

MYB119 (MYB DOMAIN PROTEIN 119) DNA BINDING / TRANSCRIPTION FACTOR
AT4G00540

Predicted

interaction prediction

FSW = 0.0239

Class C:

nucleus

ATMYB3R2 (MYB DOMAIN PROTEIN 3R2) DNA BINDING / TRANSCRIPTION FACTOR
AT5G16630

Predicted

two hybrid

FSW = 0.0612

Unknown

RAD4 DAMAGED DNA BINDING
AT3G59040

Predicted

interaction prediction

FSW = 0.0191

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT2G33340

Predicted

Co-purification

FSW = 0.1581

Unknown

NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G80070

Predicted

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2597

Unknown

SUS2 (ABNORMAL SUSPENSOR 2)
AT1G04020

Predicted

two hybrid

FSW = 0.0294

Unknown

BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G60170

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.3518

Unknown

EMB1220 (EMBRYO DEFECTIVE 1220)
AT5G41770

Predicted

Affinity Capture-MS

FSW = 0.1319

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT2G29210

Predicted

two hybrid

FSW = 0.0211

Unknown

SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN
AT4G03430

Predicted

Affinity Capture-MS

FSW = 0.2152

Unknown

EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT5G13570

Predicted

Affinity Capture-MS

FSW = 0.1060

Unknown

DCP2 (DECAPPING 2) HYDROLASE/ M7G(5)PPPN DIPHOSPHATASE/ MRNA BINDING / PROTEIN HOMODIMERIZATION
AT5G16640

Predicted

two hybrid

FSW = 0.0175

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G75660

Predicted

Affinity Capture-MS

two hybrid

Co-expression

FSW = 0.0150

Unknown

XRN3 5-3 EXORIBONUCLEASE
AT5G15770

Predicted

interaction prediction

interologs mapping

FSW = 0.1674

Unknown

ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454