Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G76920 - ( F-box family protein (FBX3) )
82 Proteins interacs with AT1G76920Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G75950 | Experimentaltwo hybridtwo hybrid | FSW = 0.0339
| Unknown | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G20140 | Experimentaltwo hybrid | FSW = 0.0705
| Unknown | ASK4 (ARABIDOPSIS SKP1-LIKE 4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G42190 | Experimentaltwo hybrid | FSW = 0.0314
| Unknown | ASK2 (ARABIDOPSIS SKP1-LIKE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G21850 | Experimentaltwo hybrid | FSW = 0.1132
| Unknown | ASK9 (ARABIDOPSIS SKP1-LIKE 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G03160 | Experimentaltwo hybrid | FSW = 0.0812
| Unknown | ASK19 (ARABIDOPSIS SKP1-LIKE 19) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G03170 | Experimentaltwo hybrid | FSW = 0.0956
| Unknown | ASK14 (ARABIDOPSIS SKP1-LIKE 14) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G34470 | Experimentaltwo hybrid | FSW = 0.1132
| Unknown | ASK12 (ARABIDOPSIS SKP1-LIKE 12) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G34210 | Experimentaltwo hybrid | FSW = 0.0694
| Unknown | ASK11 (ARABIDOPSIS SKP1-LIKE 11) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G60010 | Experimental | FSW = 0.0843
| Unknown | ASK13 (ARABIDOPSIS SKP1-LIKE 13) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G42580 | Experimentalphage display | FSW = 0.0046
| Unknown | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3) BINDING / PROTEIN BINDING |
AT4G27090 | PredictedPhenotypic Enhancement | FSW = 0.1591
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14B) |
AT2G47610 | PredictedPhenotypic Enhancement | FSW = 0.0117
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT4G16660 | PredictedPhenotypic Enhancement | FSW = 0.0583
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT4G36130 | PredictedPhenotypic Enhancement | FSW = 0.0368
| Unknown | 60S RIBOSOMAL PROTEIN L8 (RPL8C) |
AT4G36750 | PredictedPhenotypic Enhancement | FSW = 0.1154
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT3G30390 | PredictedPhenotypic Suppression | FSW = 0.1303
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT3G62870 | PredictedSynthetic Lethality | FSW = 0.0695
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G20800 | PredictedPhenotypic Enhancement | FSW = 0.0660
| Unknown | NDB4 (NAD(P)H DEHYDROGENASE B4) NADH DEHYDROGENASE |
AT1G65540 | PredictedPhenotypic Enhancement | FSW = 0.0237
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT1G07890 | PredictedPhenotypic Suppression | FSW = 0.0642
| Unknown | APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE |
AT4G35090 | PredictedPhenotypic Enhancement | FSW = 0.1024
| Unknown | CAT2 (CATALASE 2) CATALASE |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.0410
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT1G55920 | PredictedPhenotypic Enhancement | FSW = 0.2634
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT3G54670 | PredictedPhenotypic Enhancement | FSW = 0.0813
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT1G71860 | PredictedSynthetic Lethality | FSW = 0.0101
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT3G19930 | PredictedPhenotypic Enhancement | FSW = 0.1481
| Unknown | STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G37790 | PredictedPhenotypic Enhancement | FSW = 0.0606
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G34450 | PredictedPhenotypic Enhancement | FSW = 0.2218
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.0929
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G01210 | PredictedPhenotypic Enhancement | FSW = 0.1005
| Unknown | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
AT2G15430 | PredictedPhenotypic Suppression | FSW = 0.0715
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT4G39160 | PredictedPhenotypic Enhancement | FSW = 0.0574
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT2G18700 | PredictedPhenotypic Enhancement | FSW = 0.0368
| Unknown | ATTPS11 TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT5G24090 | PredictedSynthetic Lethality | FSW = 0.0463
| Unknown | ACIDIC ENDOCHITINASE (CHIB1) |
AT2G05170 | PredictedPhenotypic Enhancement | FSW = 0.0211
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT4G39200 | PredictedPhenotypic Enhancement | FSW = 0.0667
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT5G28060 | PredictedPhenotypic Suppression | FSW = 0.2212
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24B) |
AT4G39100 | PredictedPhenotypic Suppression | FSW = 0.2181
| Unknown | SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR |
AT1G12130 | PredictedPhenotypic Enhancement | FSW = 0.0242
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G20693 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.0641
| Unknown | HMGB2 (HIGH MOBILITY GROUP B 2) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G35350 | PredictedPhenotypic Enhancement | FSW = 0.0402
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G49520 | PredictedPhenotypic Enhancement | FSW = 0.1901
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G52500 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0814
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G55255 | PredictedPhenotypic Enhancement | FSW = 0.0260
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G60710 | PredictedPhenotypic Suppression | FSW = 0.0284
| Unknown | ATB2 OXIDOREDUCTASE |
AT1G07340 | PredictedPhenotypic Suppression | FSW = 0.0511
| Unknown | ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G10210 | PredictedPhenotypic Enhancement | FSW = 0.0150
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G18830 | PredictedPhenotypic Suppression | FSW = 0.1217
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.0384
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G61670 | PredictedPhenotypic Suppression | FSW = 0.3314
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT1G68390 | PredictedPhenotypic Enhancement | FSW = 0.0647
| Unknown | UNKNOWN PROTEIN |
AT2G01830 | PredictedPhenotypic Suppression | FSW = 0.0869
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
AT2G03130 | PredictedPhenotypic Enhancement | FSW = 0.0614
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT2G14880 | PredictedPhenotypic Suppression | FSW = 0.0330
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT2G19160 | PredictedPhenotypic Suppression | FSW = 0.0674
| Unknown | UNKNOWN PROTEIN |
AT2G24960 | PredictedPhenotypic Enhancement | FSW = 0.1600
| Unknown | UNKNOWN PROTEIN |
AT2G36260 | PredictedPhenotypic Suppression | FSW = 0.0703
| Unknown | IRON-SULFUR CLUSTER ASSEMBLY COMPLEX PROTEIN PUTATIVE |
AT3G05960 | PredictedPhenotypic Suppression | FSW = 0.0625
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G14740 | PredictedPhenotypic Enhancement | FSW = 0.0809
| Unknown | PHD FINGER FAMILY PROTEIN |
AT3G29060 | PredictedPhenotypic Enhancement | FSW = 0.1103
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 6 PLANT STRUCTURES EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE 4 ANTHESIS PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G140401) HAS 970 BLAST HITS TO 889 PROTEINS IN 159 SPECIES ARCHAE - 2 BACTERIA - 5 METAZOA - 379 FUNGI - 260 PLANTS - 176 VIRUSES - 28 OTHER EUKARYOTES - 120 (SOURCE NCBI BLINK) |
AT3G43980 | PredictedPhenotypic Enhancement | FSW = 0.0294
| Unknown | 40S RIBOSOMAL PROTEIN S29 (RPS29A) |
AT4G24040 | PredictedPhenotypic Suppression | FSW = 0.1616
| Unknown | TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE |
AT4G25960 | PredictedPhenotypic Suppression | FSW = 0.0299
| Unknown | PGP2 (P-GLYCOPROTEIN 2) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G36630 | PredictedPhenotypic Enhancement | FSW = 0.0091
| Unknown | EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR |
AT5G11570 | PredictedPhenotypic Enhancement | FSW = 0.0622
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G14050 | PredictedPhenotypic Suppression | FSW = 0.0183
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G20060 | PredictedPhenotypic Enhancement | FSW = 0.0079
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT5G52200 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1604
| Unknown | UNKNOWN PROTEIN |
AT5G57190 | PredictedPhenotypic Suppression | FSW = 0.1783
| Unknown | PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE |
AT5G66410 | PredictedPhenotypic Suppression | FSW = 0.0631
| Unknown | PLP3B (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) BETA-TUBULIN BINDING |
AT2G18170 | PredictedPhenotypic Enhancement | FSW = 0.0254
| Unknown | ATMPK7 (ARABIDOPSIS THALIANA MAP KINASE 7) MAP KINASE/ KINASE |
AT2G21890 | PredictedPhenotypic Enhancement | FSW = 0.0927
| Unknown | CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT2G23070 | PredictedPhenotypic Enhancement | FSW = 0.0925
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G37420 | PredictedPhenotypic Enhancement | FSW = 0.0741
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G41340 | PredictedPhenotypic Enhancement | FSW = 0.0334
| Unknown | RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT D) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G11230 | PredictedPhenotypic Enhancement | FSW = 0.0542
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G54490 | PredictedPhenotypic Enhancement | FSW = 0.0368
| Unknown | RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT E) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G61210 | PredictedPhenotypic Enhancement | FSW = 0.0641
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT4G22330 | PredictedPhenotypic Enhancement | FSW = 0.0703
| Unknown | ATCES1 CATALYTIC/ HYDROLASE ACTING ON CARBON-NITROGEN (BUT NOT PEPTIDE) BONDS IN LINEAR AMIDES |
AT4G33950 | PredictedPhenotypic Suppression | FSW = 0.1666
| Unknown | OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE |
AT5G04420 | PredictedPhenotypic Enhancement | FSW = 0.0506
| Unknown | KELCH REPEAT-CONTAINING PROTEIN |
AT5G38110 | PredictedPhenotypic Suppression | FSW = 0.0978
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454