Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G77145 - ( unknown protein )

16 Proteins interacs with AT1G77145
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G15010

Experimental

protein array

FSW = 0.3810

Class A:

nucleus

Class D:

nucleus (p = 0.78)

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G46130

Experimental

protein array

FSW = 0.6400

Class A:

nucleus

Class D:

nucleus (p = 0.78)

WRKY43 TRANSCRIPTION FACTOR
AT4G23810

Experimental

protein array

FSW = 0.5120

Class A:

nucleus

Class D:

nucleus (p = 0.78)

WRKY53 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT1G09840

Experimental

protein array

FSW = 0.1693

Class B:

plasma membrane

nucleus

Class D:

nucleus (p = 0.78)

ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41) ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G43810

Experimental

protein array

FSW = 0.1095

Class B:

plasma membrane

nucleus

Class D:

nucleus (p = 0.78)

CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT1G66410

Experimental

protein array

FSW = 0.1222

Class B:

plasma membrane

nucleus

Class D:

nucleus (p = 0.78)

CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER
AT3G51920

Experimental

protein array

FSW = 0.1473

Unknown

CAM9 (CALMODULIN 9) CALCIUM ION BINDING
AT2G41090

Experimental

protein array

FSW = 0.1187

Unknown

CALMODULIN-LIKE CALCIUM-BINDING PROTEIN 22 KDA (CABP-22)
AT1G68380

Experimental

protein array

FSW = 0.5689

Unknown

UNKNOWN PROTEIN
AT1G27690

Experimental

protein array

FSW = 0.2105

Unknown

UNKNOWN PROTEIN
AT2G30980

Experimental

protein array

FSW = 0.3462

Unknown

ASKDZETA (ARABIDOPSIS SHAGGY-RELATED PROTEIN KINASE DZETA) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G39540

Experimental

protein array

FSW = 0.6400

Unknown

SHIKIMATE KINASE FAMILY PROTEIN
AT4G34380

Experimental

protein array

FSW = 0.5120

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G66790

Experimental

protein array

FSW = 0.5689

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G21274

Experimental

protein array

FSW = 0.1366

Unknown

CAM6 (CALMODULIN 6) CALCIUM ION BINDING
AT4G14640

Experimental

protein array

FSW = 0.1945

Unknown

CAM8 (CALMODULIN 8) CALCIUM ION BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454