Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G77470 - ( replication factor C 36 kDA putative )
29 Proteins interacs with AT1G77470Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G37930 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0404
| Unknown | SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1) GLYCINE HYDROXYMETHYLTRANSFERASE/ POLY(U) BINDING |
AT5G44780 | Predictedinteraction predictionCo-expression | FSW = 0.0839
| Unknown | UNKNOWN PROTEIN |
AT3G03330 | PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT1G08130 | PredictedAffinity Capture-Western | FSW = 0.2374
| Unknown | ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) ATP BINDING / DNA BINDING / DNA LIGASE (ATP) |
AT4G25630 | PredictedSynthetic LethalityCo-expression | FSW = 0.0060
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT1G21690 | Predictedtwo hybridtwo hybridReconstituted Complexin vivoin vitroCo-purificationCo-purificationCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridinteraction predictionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2951
| Unknown | EMB1968 (EMBRYO DEFECTIVE 1968) ATP BINDING / ATPASE/ DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G29570 | Predictedin vitroin vitroin vitroin vitroAffinity Capture-MSCo-expression | FSW = 0.1220
| Unknown | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT1G07370 | PredictedSynthetic RescueReconstituted Complexinteraction predictionCo-expression | FSW = 0.1408
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT3G20010 | PredictedPhenotypic Enhancement | FSW = 0.0523
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT5G26780 | PredictedAffinity Capture-MS | FSW = 0.0474
| Unknown | SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2) CATALYTIC/ GLYCINE HYDROXYMETHYLTRANSFERASE/ PYRIDOXAL PHOSPHATE BINDING |
AT1G67630 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.1020
| Unknown | POLA2 (DNA POLYMERASE ALPHA 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT3G59990 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0627
| Unknown | MAP2B (METHIONINE AMINOPEPTIDASE 2B) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE |
AT2G44180 | PredictedAffinity Capture-MS | FSW = 0.0566
| Unknown | MAP2A (METHIONINE AMINOPEPTIDASE 2A) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE |
AT5G66130 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexReconstituted ComplexAffinity Capture-MSin vitroAffinity Capture-MSReconstituted Complexin vitroin vivoCo-purification | FSW = 0.1747
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT5G58290 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0500
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT1G24706 | Predictedtwo hybrid | FSW = 0.0097
| Unknown | UNKNOWN PROTEIN |
AT1G63160 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridReconstituted Complexco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridAffinity Capture-MSReconstituted Complexco-fractionationCo-fractionationinteraction predictionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4037
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
AT1G04730 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexCo-purificationinteraction predictionCo-expression | FSW = 0.0641
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G51710 | PredictedPhenotypic Enhancement | FSW = 0.0543
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G08880 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0495
| Unknown | H2AXA DNA BINDING |
AT1G15780 | PredictedPhenotypic Enhancement | FSW = 0.0158
| Unknown | UNKNOWN PROTEIN |
AT1G66740 | PredictedAffinity Capture-WesternCo-expression | FSW = 0.0635
| Unknown | SGA2 |
AT5G22010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2799
| Unknown | ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G27740 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2408
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G43500 | PredictedPhenotypic Enhancement | FSW = 0.0886
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G23540 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0294
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT5G48120 | PredictedPhenotypic Enhancement | FSW = 0.0556
| Unknown | BINDING |
AT4G20020 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0496
| Unknown | UNKNOWN PROTEIN |
AT4G26800 | PredictedGene fusion method | FSW = 0.0313
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454