Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G77470 - ( replication factor C 36 kDA putative )

29 Proteins interacs with AT1G77470
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G37930

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0404

Unknown

SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1) GLYCINE HYDROXYMETHYLTRANSFERASE/ POLY(U) BINDING
AT5G44780

Predicted

interaction prediction

Co-expression

FSW = 0.0839

Unknown

UNKNOWN PROTEIN
AT3G03330

Predicted

Affinity Capture-MS

FSW = 0.0334

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT1G08130

Predicted

Affinity Capture-Western

FSW = 0.2374

Unknown

ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1) ATP BINDING / DNA BINDING / DNA LIGASE (ATP)
AT4G25630

Predicted

Synthetic Lethality

Co-expression

FSW = 0.0060

Unknown

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT1G21690

Predicted

two hybrid

two hybrid

Reconstituted Complex

in vivo

in vitro

Co-purification

Co-purification

Co-purification

Co-purification

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

interaction prediction

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2951

Unknown

EMB1968 (EMBRYO DEFECTIVE 1968) ATP BINDING / ATPASE/ DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT2G29570

Predicted

in vitro

in vitro

in vitro

in vitro

Affinity Capture-MS

Co-expression

FSW = 0.1220

Unknown

PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR
AT1G07370

Predicted

Synthetic Rescue

Reconstituted Complex

interaction prediction

Co-expression

FSW = 0.1408

Unknown

PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT3G20010

Predicted

Phenotypic Enhancement

FSW = 0.0523

Unknown

SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT5G26780

Predicted

Affinity Capture-MS

FSW = 0.0474

Unknown

SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2) CATALYTIC/ GLYCINE HYDROXYMETHYLTRANSFERASE/ PYRIDOXAL PHOSPHATE BINDING
AT1G67630

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1020

Unknown

POLA2 (DNA POLYMERASE ALPHA 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT3G59990

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0627

Unknown

MAP2B (METHIONINE AMINOPEPTIDASE 2B) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE
AT2G44180

Predicted

Affinity Capture-MS

FSW = 0.0566

Unknown

MAP2A (METHIONINE AMINOPEPTIDASE 2A) AMINOPEPTIDASE/ METALLOEXOPEPTIDASE
AT5G66130

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

Reconstituted Complex

Affinity Capture-MS

in vitro

Affinity Capture-MS

Reconstituted Complex

in vitro

in vivo

Co-purification

FSW = 0.1747

Unknown

ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT5G58290

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0500

Unknown

RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT1G24706

Predicted

two hybrid

FSW = 0.0097

Unknown

UNKNOWN PROTEIN
AT1G63160

Predicted

interaction prediction

two hybrid

two hybrid

two hybrid

Reconstituted Complex

co-fractionation

Co-fractionation

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Reconstituted Complex

co-fractionation

Co-fractionation

interaction prediction

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4037

Unknown

REPLICATION FACTOR C 40 KDA PUTATIVE
AT1G04730Predicted

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

Co-purification

interaction prediction

Co-expression

FSW = 0.0641

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G51710

Predicted

Phenotypic Enhancement

FSW = 0.0543

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G08880

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0495

Unknown

H2AXA DNA BINDING
AT1G15780

Predicted

Phenotypic Enhancement

FSW = 0.0158

Unknown

UNKNOWN PROTEIN
AT1G66740

Predicted

Affinity Capture-Western

Co-expression

FSW = 0.0635

Unknown

SGA2
AT5G22010

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2799

Unknown

ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G27740

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.2408

Unknown

EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G43500

Predicted

Phenotypic Enhancement

FSW = 0.0886

Unknown

ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G23540

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0294

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE
AT5G48120

Predicted

Phenotypic Enhancement

FSW = 0.0556

Unknown

BINDING
AT4G20020

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0496

Unknown

UNKNOWN PROTEIN
AT4G26800

Predicted

Gene fusion method

FSW = 0.0313

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454