Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G77510 - ( ATPDIL1-2 (PDI-LIKE 1-2) protein disulfide isomerase )
25 Proteins interacs with AT1G77510Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G61790 | Predictedin vitro | FSW = 0.1414
| Class C:vacuoleplastidplasma membraneendoplasmic reticulum | CALNEXIN 1 (CNX1) |
AT5G60640 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3920
| Class C:vacuoleplastidendoplasmic reticulum | ATPDIL1-4 (PDI-LIKE 1-4) PROTEIN DISULFIDE ISOMERASE |
AT3G54960 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2933
| Class C:vacuoleplastidendoplasmic reticulum | ATPDIL1-3 (PDI-LIKE 1-3) PROTEIN DISULFIDE ISOMERASE |
AT5G63840 | PredictedPhenotypic Enhancement | FSW = 0.0938
| Class C:plastidendoplasmic reticulum | RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT1G21750 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2045
| Class C:plastidendoplasmic reticulum | ATPDIL1-1 (PDI-LIKE 1-1) PROTEIN DISULFIDE ISOMERASE |
AT5G16150 | Predictedin vivo | FSW = 0.0444
| Class C:plastid | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G03475 | PredictedAffinity Capture-MS | FSW = 0.0653
| Class C:plastid | LIN2 (LESION INITIATION 2) COPROPORPHYRINOGEN OXIDASE |
AT1G12230 | Predictedinteraction prediction | FSW = 0.0776
| Class C:plastid | TRANSALDOLASE PUTATIVE |
AT5G23630 | PredictedPhenotypic Enhancement | FSW = 0.0704
| Class C:plasma membraneendoplasmic reticulum | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G08450 | Predictedin vitroAffinity Capture-MS | FSW = 0.0776
| Class C:plasma membrane | CRT3 (CALRETICULIN 3) CALCIUM ION BINDING / UNFOLDED PROTEIN BINDING |
AT1G65040 | PredictedPhenotypic Enhancement | FSW = 0.0381
| Class C:plasma membrane | PROTEIN BINDING / ZINC ION BINDING |
AT2G17520 | PredictedPhenotypic Enhancement | FSW = 0.0776
| Class C:endoplasmic reticulum | IRE1A ENDORIBONUCLEASE/ KINASE |
AT3G16110 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3462
| Class C:endoplasmic reticulum | ATPDIL1-6 (PDI-LIKE 1-6) PROTEIN DISULFIDE ISOMERASE |
AT1G67490 | PredictedPhenotypic Enhancement | FSW = 0.0896
| Class C:endoplasmic reticulum | GCS1 (GLUCOSIDASE 1) ALPHA-GLUCOSIDASE |
AT1G52260 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0994
| Class C:endoplasmic reticulum | ATPDIL1-5 (PDI-LIKE 1-5) PROTEIN DISULFIDE ISOMERASE |
AT2G38960 | PredictedAffinity Capture-Western | FSW = 0.0144
| Class C:endoplasmic reticulum | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT1G04980 | Predictedinterologs mappinginteraction prediction | FSW = 0.0428
| Unknown | ATPDIL2-2 (PDI-LIKE 2-2) PROTEIN DISULFIDE ISOMERASE |
AT2G38050 | Predictedtwo hybrid | FSW = 0.0290
| Unknown | DET2 (DE-ETIOLATED 2) STEROL 5-ALPHA REDUCTASE |
AT4G39220 | PredictedPhenotypic Enhancement | FSW = 0.1008
| Unknown | ATRER1A |
AT1G53880 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT5G43710 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0540
| Unknown | GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN |
AT5G51120 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0220
| Unknown | PABN1 (POLYADENYLATE-BINDING PROTEIN 1) RNA BINDING / POLY(A) BINDING / PROTEIN BINDING |
AT5G67380 | Predictedinteraction prediction | FSW = 0.0037
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT5G57740 | PredictedGene fusion methodCo-expression | FSW = 0.0690
| Unknown | XBAT32 PROTEIN BINDING / ZINC ION BINDING |
AT3G04130 | PredictedGene fusion method | FSW = 0.1379
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454