Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G77670 - ( aminotransferase class I and II family protein )
25 Proteins interacs with AT1G77670Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63400 | Predictedpull down | FSW = 0.0102
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT2G33210 | Predictedpull down | FSW = 0.0031
| Unknown | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT2G17360 | Predictedtwo hybridtwo hybrid | FSW = 0.0125
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT3G57990 | PredictedSynthetic Lethality | FSW = 0.0071
| Unknown | UNKNOWN PROTEIN |
AT1G18080 | Predictedtwo hybridtwo hybrid | FSW = 0.0194
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT2G22250 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1773
| Unknown | AMINOTRANSFERASE CLASS I AND II FAMILY PROTEIN |
AT1G07940 | Predictedsynthetic growth defect | FSW = 0.0395
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G48750 | Predictedbiochemicalinteraction prediction | FSW = 0.0094
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT3G47370 | Predictedtwo hybrid | FSW = 0.0254
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT2G32920 | PredictedGene fusion method | FSW = 0.0955
| Unknown | ATPDIL2-3 (PDI-LIKE 2-3) PROTEIN DISULFIDE ISOMERASE |
AT5G52640 | Predictedpull downsynthetic growth defect | FSW = 0.0063
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G62300 | Predictedtwo hybrid | FSW = 0.0176
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT5G47700 | Predictedtwo hybridtwo hybrid | FSW = 0.0303
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 (RPP1C) |
AT3G56760 | Predictedsynthetic growth defect | FSW = 0.0627
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT3G18130 | Predictedtwo hybrid | FSW = 0.0389
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT5G58420 | Predictedtwo hybrid | FSW = 0.0185
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4D) |
AT3G25980 | PredictedSynthetic Lethality | FSW = 0.0084
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT5G40760 | Predictedpull down | FSW = 0.0248
| Unknown | G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6) GLUCOSE-6-PHOSPHATE DEHYDROGENASE |
AT5G63860 | PredictedGene fusion method | FSW = 0.0418
| Unknown | UVR8 (UVB-RESISTANCE 8) CHROMATIN BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT5G55160 | PredictedAffinity Capture-MS | FSW = 0.0540
| Unknown | SUMO2 (SMALL UBIQUITIN-LIKE MODIFIER 2) PROTEIN BINDING / PROTEIN TAG |
AT5G24510 | Predictedtwo hybrid | FSW = 0.0289
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT3G01350 | Predictedsynthetic growth defect | FSW = 0.1109
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G45030 | Predictedtwo hybrid | FSW = 0.1185
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20A) |
AT5G36160 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0653
| Unknown | AMINOTRANSFERASE-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454