Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G77950 - ( AGL67 (AGAMOUS-LIKE 67) transcription factor )

21 Proteins interacs with AT1G77950
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G27090

Predicted

Synthetic Rescue

FSW = 0.0686

Class C:

nucleus

60S RIBOSOMAL PROTEIN L14 (RPL14B)
AT3G20550

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

FSW = 0.0805

Class C:

nucleus

DDL (DAWDLE)
AT1G69120

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1029

Class C:

nucleus

AP1 (APETALA1) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT3G50670

Predicted

Affinity Capture-MS

FSW = 0.0109

Class C:

nucleus

U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G30260

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1309

Class C:

nucleus

AGL79 (AGAMOUS-LIKE 79) DNA BINDING / TRANSCRIPTION FACTOR
AT5G23260

Predicted

Gene fusion method

Co-expression

FSW = 0.1195

Class C:

nucleus

TT16 (TRANSPARENT TESTA16) TRANSCRIPTION FACTOR
AT4G18960

Predicted

Gene fusion method

Co-expression

FSW = 0.1029

Class C:

nucleus

AG (AGAMOUS) DNA BINDING / TRANSCRIPTION FACTOR
AT1G21190

Predicted

co-fractionation

Co-fractionation

FSW = 0.0448

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G47520

Predicted

Phenotypic Suppression

FSW = 0.0390

Unknown

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT4G01840

Predicted

interologs mapping

FSW = 0.0222

Unknown

KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL
AT4G19690

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Co-purification

FSW = 0.0989

Unknown

IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT2G30160

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0129

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT3G51300

Predicted

Synthetic Rescue

FSW = 0.0244

Unknown

ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING
AT2G43460

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0379

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38A)
AT2G45650

Predicted

Gene fusion method

Co-expression

FSW = 0.0882

Unknown

AGL6 (AGAMOUS-LIKE 6) DNA BINDING / TRANSCRIPTION FACTOR
AT1G22550

Predicted

interologs mapping

FSW = 0.1610

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT1G35530Predicted

interologs mapping

FSW = 0.0576

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT3G14740

Predicted

Phenotypic Enhancement

FSW = 0.0847

Unknown

PHD FINGER FAMILY PROTEIN
AT2G46230

Predicted

Affinity Capture-MS

FSW = 0.0576

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF652 (INTERPROIPR006984) NUCLEOTIDE BINDING PROTEIN PINC (INTERPROIPR006596) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G265301) HAS 493 BLAST HITS TO 493 PROTEINS IN 165 SPECIES ARCHAE - 21 BACTERIA - 0 METAZOA - 192 FUNGI - 143 PLANTS - 53 VIRUSES - 0 OTHER EUKARYOTES - 84 (SOURCE NCBI BLINK)
AT4G16710

Predicted

Phenotypic Enhancement

FSW = 0.0303

Unknown

GLYCOSYLTRANSFERASE FAMILY PROTEIN 28
AT5G13150

Predicted

interologs mapping

FSW = 0.0615

Unknown

ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454