Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT1G78290 - ( serine/threonine protein kinase putative )
42 Proteins interacs with AT1G78290Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G49010 | PredictedPhenotypic Suppression | FSW = 0.0142
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G28710 | PredictedPhenotypic Suppression | FSW = 0.0456
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT5G24780 | PredictedAffinity Capture-MS | FSW = 0.4053
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT2G22780 | PredictedAffinity Capture-MS | FSW = 0.0454
| Unknown | PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT2G31170 | PredictedAffinity Capture-MS | FSW = 0.1908
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT4G26970 | PredictedAffinity Capture-MS | FSW = 0.4042
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.0932
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT4G23430 | PredictedAffinity Capture-MS | FSW = 0.3595
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4749
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT1G50310 | PredictedAffinity Capture-MS | FSW = 0.0456
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G22120 | PredictedAffinity Capture-MS | FSW = 0.4524
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G72330 | PredictedAffinity Capture-MS | FSW = 0.1321
| Unknown | ALAAT2 (ALANINE AMINOTRANSFERASE 2) ATP BINDING / L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT3G10920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2918
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT2G18450 | PredictedAffinity Capture-MS | FSW = 0.0952
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.4899
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MS | FSW = 0.2785
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G08730 | PredictedAffinity Capture-MS | FSW = 0.2544
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.3631
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT2G27550 | PredictedAffinity Capture-MS | FSW = 0.1307
| Unknown | ATC (ARABIDOPSIS THALIANA CENTRORADIALIS) PHOSPHATIDYLETHANOLAMINE BINDING |
AT1G10280 | PredictedAffinity Capture-MS | FSW = 0.0864
| Unknown | UNKNOWN PROTEIN |
AT1G58520 | PredictedAffinity Capture-MS | FSW = 0.4646
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT1G75020 | PredictedAffinity Capture-MS | FSW = 0.0602
| Unknown | LPAT4 (LYSOPHOSPHATIDYL ACYLTRANSFERASE 4) ACYLTRANSFERASE |
AT2G37760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.4275
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3074
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G78970 | PredictedPhenotypic Suppression | FSW = 0.0482
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G01770 | PredictedAffinity Capture-MS | FSW = 0.4721
| Unknown | VIT1 (VACUOLAR IRON TRANSPORTER 1) IRON ION TRANSMEMBRANE TRANSPORTER |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.1763
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.4142
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G34250 | PredictedAffinity Capture-MS | FSW = 0.2932
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.4365
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G47570 | PredictedAffinity Capture-MS | FSW = 0.4339
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.2815
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G49880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4417
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G53730 | PredictedAffinity Capture-MS | FSW = 0.5143
| Unknown | HISTONE H4 |
AT4G17380 | PredictedAffinity Capture-MS | FSW = 0.2316
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT4G26810 | PredictedAffinity Capture-MS | FSW = 0.2292
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.1164
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.2850
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3359
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G20060 | PredictedAffinity Capture-MS | FSW = 0.4137
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT5G27640 | PredictedAffinity Capture-MS | FSW = 0.4721
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT2G43770 | PredictedGene fusion method | FSW = 0.0108
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454