Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G78380 - ( ATGSTU19 (GLUTATHIONE S-TRANSFERASE TAU 19) glutathione binding / glutathione transferase )

15 Proteins interacs with AT1G78380
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33210

Predicted

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FSW = 0.0352

Class C:

vacuole

plastid

plasma membrane

HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT4G37910

Predicted

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FSW = 0.0361

Class C:

vacuole

MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT1G11870

Predicted

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FSW = 0.0882

Class C:

plastid

SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE
AT3G13490

Predicted

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FSW = 0.1937

Class C:

plastid

OVA5 (OVULE ABORTION 5) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G44890

Predicted

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FSW = 0.1287

Class C:

plastid

RPL9 (RIBOSOMAL PROTEIN L9) STRUCTURAL CONSTITUENT OF RIBOSOME
ATCG00180Predicted

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FSW = 0.1641

Class C:

plastid

RNA POLYMERASE BETA SUBUNIT-1
ATCG00190Predicted

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FSW = 0.1035

Class C:

plastid

CHLOROPLAST DNA-DEPENDENT RNA POLYMERASE B SUBUNIT THE TRANSCRIPTION OF THIS GENE IS REGULATED BY A NUCLEAR ENCODED RNA POLYMERASE THIS GENE HAS BEEN TRANSFERRED TO MITOCHONDRIAL GENOME DURING CRUCIFER EVOLUTION
ATCG00740Predicted

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FSW = 0.0640

Class C:

plastid

RNA POLYMERASE ALPHA SUBUNIT
AT5G19500

Predicted

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FSW = 0.0381

Unknown

TRYPTOPHAN/TYROSINE PERMEASE FAMILY PROTEIN
AT1G17170

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2048

Unknown

ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24) GLUTATHIONE BINDING / GLUTATHIONE TRANSFERASE
AT1G53680

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.2297

Unknown

ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28) GLUTATHIONE TRANSFERASE
AT1G78360

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0426

Unknown

ATGSTU21 (GLUTATHIONE S-TRANSFERASE TAU 21) GLUTATHIONE TRANSFERASE
AT1G17190

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1977

Unknown

ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26) GLUTATHIONE TRANSFERASE
AT1G78320

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1977

Unknown

ATGSTU23 (GLUTATHIONE S-TRANSFERASE TAU 23) GLUTATHIONE TRANSFERASE
AT3G62760

Predicted

Enriched domain pair

Gene fusion method

Co-expression

FSW = 0.0379

Unknown

ATGSTF13 GLUTATHIONE TRANSFERASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454