Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G78720 - ( protein transport protein sec61 putative )
24 Proteins interacs with AT1G78720Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01720 | Predictedtwo hybrid | FSW = 0.1408
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT5G66680 | Predictedtwo hybrid | FSW = 0.0899
| Unknown | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
AT3G18140 | Predictedco-fractionationCo-fractionation | FSW = 0.0145
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G62660 | Predictedtwo hybrid | FSW = 0.1481
| Unknown | BETA-FRUCTOSIDASE (BFRUCT3) / BETA-FRUCTOFURANOSIDASE / INVERTASE VACUOLAR |
AT1G55120 | Predictedinteraction prediction | FSW = 0.0988
| Unknown | ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / LEVANASE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0045
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G29310 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3286
| Unknown | P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
AT5G19690 | Predictedtwo hybrid | FSW = 0.1848
| Unknown | STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A) OLIGOSACCHARYL TRANSFERASE |
AT4G21180 | PredictedCo-purificationCo-purificationCo-purificationtwo hybridinterologs mapping | FSW = 0.0952
| Unknown | ATERDJ2B HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT5G05670 | Predictedtwo hybrid | FSW = 0.0883
| Unknown | SIGNAL RECOGNITION PARTICLE BINDING |
AT3G52400 | PredictedSynthetic Lethality | FSW = 0.0381
| Unknown | SYP122 (SYNTAXIN OF PLANTS 122) SNAP RECEPTOR |
AT1G71820 | Predictedinterologs mapping | FSW = 0.0775
| Unknown | SEC6 |
AT1G65040 | PredictedSynthetic Rescueinterologs mappingSynthetic Rescue | FSW = 0.0394
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT1G53750 | PredictedAffinity Capture-Western | FSW = 0.0479
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G22980 | Predictedinteraction prediction | FSW = 0.0324
| Unknown | SCPL47 (SERINE CARBOXYPEPTIDASE-LIKE 47) SERINE-TYPE CARBOXYPEPTIDASE |
AT1G32210 | Predictedtwo hybrid | FSW = 0.2445
| Unknown | ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1) |
AT1G67730 | Predictedtwo hybrid | FSW = 0.0230
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT1G21170 | Predictedinterologs mapping | FSW = 0.0649
| Unknown | SEC5B |
AT4G24920 | Predictedinteraction predictioninterologs mappinginterologs mappingAffinity Capture-Westernco-fractionationCo-fractionationinterologs mappingCo-purificationinteraction prediction | FSW = 0.2917
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 GAMMA SUBUNIT PUTATIVE |
AT5G23540 | PredictedAffinity Capture-Western | FSW = 0.0345
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT4G29330 | PredictedPhenotypic Suppression | FSW = 0.0324
| Unknown | DER1 (DERLIN-1) |
AT3G27530 | Predictedtwo hybrid | FSW = 0.0290
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT2G18770 | Predictedinteraction prediction | FSW = 0.1103
| Unknown | SIGNAL RECOGNITION PARTICLE BINDING |
AT2G34250 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0287
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454