Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G78960 - ( ATLUP2 beta-amyrin synthase/ lupeol synthase )
34 Proteins interacs with AT1G78960Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G01100 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3200
| Unknown | ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) ADP TRANSMEMBRANE TRANSPORTER/ AMP TRANSMEMBRANE TRANSPORTER/ ATP TRANSMEMBRANE TRANSPORTER/ BINDING |
AT1G07660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1212
| Unknown | HISTONE H4 |
AT5G19320 | PredictedAffinity Capture-MS | FSW = 0.1674
| Unknown | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR |
AT1G16240 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.2687
| Unknown | SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR |
AT2G07050 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.4694
| Unknown | CAS1 (CYCLOARTENOL SYNTHASE 1) CYCLOARTENOL SYNTHASE |
AT2G40400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3600
| Unknown | UNKNOWN PROTEIN |
AT1G12900 | PredictedAffinity Capture-MS | FSW = 0.2807
| Unknown | GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT5G58640 | PredictedAffinity Capture-MS | FSW = 0.0310
| Unknown | SELENOPROTEIN-RELATED |
AT4G36640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2250
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT2G28740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3064
| Unknown | HIS4 DNA BINDING |
AT2G05170 | PredictedAffinity Capture-MS | FSW = 0.0344
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G72680 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4313
| Unknown | CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0409
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.0889
| Unknown | XIF MOTOR |
AT2G34890 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3200
| Unknown | CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE |
AT3G22320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2542
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G28610 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5737
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G46320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2622
| Unknown | HISTONE H4 |
AT3G50860 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1567
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT4G10130 | PredictedAffinity Capture-MS | FSW = 0.0456
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT5G13860 | PredictedAffinity Capture-MS | FSW = 0.0423
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G38890 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1619
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G60870 | PredictedAffinity Capture-MS | FSW = 0.0349
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT1G66960 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4543
| Unknown | LUPEOL SYNTHASE PUTATIVE / 23-OXIDOSQUALENE-TRITERPENOID CYCLASE PUTATIVE |
AT1G78500 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5417
| Unknown | PENTACYCLIC TRITERPENE SYNTHASE PUTATIVE |
AT5G42600 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.3806
| Unknown | MRN1 (MARNERAL SYNTHASE) CATALYTIC/ MARNERAL SYNTHASE |
AT5G36150 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.5417
| Unknown | ATPEN3 (PUTATIVE PENTACYCLIC TRITERPENE SYNTHASE 3) CATALYTIC/ LUPEOL SYNTHASE |
AT1G78970 | PredictedShared biological functionGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2571
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT1G78950 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.5417
| Unknown | BETA-AMYRIN SYNTHASE PUTATIVE |
AT5G48010 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3137
| Unknown | THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE |
AT4G15340 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5417
| Unknown | ATPEN1 (ARABIDOPSIS THALIANA PENTACYCLIC TRITERPENE SYNTHASE 1) ARABIDIOL SYNTHASE |
AT3G45130 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5417
| Unknown | LAS1 LANOSTEROL SYNTHASE |
AT4G15370 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4848
| Unknown | BARS1 (BARUOL SYNTHASE 1) BARUOL SYNTHASE/ CATALYTIC |
AT1G78955 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.5417
| Unknown | CAMS1 (CAMELLIOL C SYNTHASE 1) BETA-AMYRIN SYNTHASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454