Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G78960 - ( ATLUP2 beta-amyrin synthase/ lupeol synthase )

34 Proteins interacs with AT1G78960
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G01100

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3200

Unknown

ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) ADP TRANSMEMBRANE TRANSPORTER/ AMP TRANSMEMBRANE TRANSPORTER/ ATP TRANSMEMBRANE TRANSPORTER/ BINDING
AT1G07660Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1212

Unknown

HISTONE H4
AT5G19320

Predicted

Affinity Capture-MS

FSW = 0.1674

Unknown

RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR
AT1G16240

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Affinity Capture-MS

two hybrid

FSW = 0.2687

Unknown

SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR
AT2G07050

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.4694

Unknown

CAS1 (CYCLOARTENOL SYNTHASE 1) CYCLOARTENOL SYNTHASE
AT2G40400

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3600

Unknown

UNKNOWN PROTEIN
AT1G12900

Predicted

Affinity Capture-MS

FSW = 0.2807

Unknown

GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT5G58640

Predicted

Affinity Capture-MS

FSW = 0.0310

Unknown

SELENOPROTEIN-RELATED
AT4G36640

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2250

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT2G28740Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3064

Unknown

HIS4 DNA BINDING
AT2G05170

Predicted

Affinity Capture-MS

FSW = 0.0344

Unknown

ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING
AT1G72680

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4313

Unknown

CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE
AT2G31020

Predicted

Affinity Capture-MS

FSW = 0.0409

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G31900

Predicted

Affinity Capture-MS

FSW = 0.0889

Unknown

XIF MOTOR
AT2G34890

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3200

Unknown

CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT3G22320

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2542

Unknown

NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G28610

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.5737

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G46320Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2622

Unknown

HISTONE H4
AT3G50860

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.1567

Unknown

CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN
AT4G10130

Predicted

Affinity Capture-MS

FSW = 0.0456

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT5G13860

Predicted

Affinity Capture-MS

FSW = 0.0423

Unknown

ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE
AT5G38890

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1619

Unknown

EXORIBONUCLEASE-RELATED
AT5G60870

Predicted

Affinity Capture-MS

FSW = 0.0349

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT1G66960

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4543

Unknown

LUPEOL SYNTHASE PUTATIVE / 23-OXIDOSQUALENE-TRITERPENOID CYCLASE PUTATIVE
AT1G78500

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.5417

Unknown

PENTACYCLIC TRITERPENE SYNTHASE PUTATIVE
AT5G42600

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.3806

Unknown

MRN1 (MARNERAL SYNTHASE) CATALYTIC/ MARNERAL SYNTHASE
AT5G36150

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.5417

Unknown

ATPEN3 (PUTATIVE PENTACYCLIC TRITERPENE SYNTHASE 3) CATALYTIC/ LUPEOL SYNTHASE
AT1G78970

Predicted

Shared biological function

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.2571

Unknown

LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE
AT1G78950

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.5417

Unknown

BETA-AMYRIN SYNTHASE PUTATIVE
AT5G48010

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3137

Unknown

THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE
AT4G15340

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5417

Unknown

ATPEN1 (ARABIDOPSIS THALIANA PENTACYCLIC TRITERPENE SYNTHASE 1) ARABIDIOL SYNTHASE
AT3G45130

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5417

Unknown

LAS1 LANOSTEROL SYNTHASE
AT4G15370

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4848

Unknown

BARS1 (BARUOL SYNTHASE 1) BARUOL SYNTHASE/ CATALYTIC
AT1G78955

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.5417

Unknown

CAMS1 (CAMELLIOL C SYNTHASE 1) BETA-AMYRIN SYNTHASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454