Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G79020 - ( transcription factor-related )
65 Proteins interacs with AT1G79020Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | Predictedsynthetic growth defect | FSW = 0.0352
| Class C:nucleus | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT1G72730 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0204
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT3G17390 | PredictedAffinity Capture-MS | FSW = 0.0864
| Class C:nucleus | MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE |
AT3G08720 | PredictedAffinity Capture-Westerntwo hybridSynthetic Lethality | FSW = 0.0455
| Class C:nucleus | S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2) KINASE/ PROTEIN KINASE |
AT1G16690 | PredictedPhylogenetic profile method | FSW = 0.0749
| Class C:nucleus | TRANSCRIPTION FACTOR-RELATED |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0065
| Class C:nucleus | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT5G27720 | PredictedAffinity Capture-MS | FSW = 0.0547
| Class C:nucleus | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT2G40290 | PredictedSynthetic Rescue | FSW = 0.0145
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT4G31720 | PredictedAffinity Capture-MS | FSW = 0.0516
| Class C:nucleus | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT5G17690 | PredictedPhenotypic Enhancement | FSW = 0.0320
| Class C:nucleus | TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT5G67500 | Predictedinterologs mapping | FSW = 0.0169
| Unknown | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL |
AT4G01840 | Predictedsynthetic growth defect | FSW = 0.0168
| Unknown | KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT5G53170 | Predictedtwo hybrid | FSW = 0.0292
| Unknown | FTSH11 (FTSH PROTEASE 11) ATP-DEPENDENT PEPTIDASE/ ATPASE/ METALLOPEPTIDASE |
AT3G07100 | PredictedAffinity Capture-MS | FSW = 0.0168
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT1G30270 | PredictedAffinity Capture-MS | FSW = 0.0209
| Unknown | CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT1G74560 | PredictedReconstituted Complex | FSW = 0.0591
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT3G22890 | Predictedtwo hybridSynthetic Lethality | FSW = 0.0564
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G16150 | Predictedtwo hybrid | FSW = 0.0190
| Unknown | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G51820 | Predictedinterologs mapping | FSW = 0.0844
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT1G48860 | Predictedinterologs mappinginterologs mapping | FSW = 0.0757
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT3G18790 | PredictedAffinity Capture-MS | FSW = 0.0119
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT5G25400 | PredictedSynthetic LethalitySynthetic LethalityAffinity Capture-MSAffinity Capture-MSinterologs mappingSynthetic Lethality | FSW = 0.1837
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT3G55810 | PredictedAffinity Capture-MS | FSW = 0.0169
| Unknown | PYRUVATE KINASE PUTATIVE |
AT2G47160 | PredictedAffinity Capture-MS | FSW = 0.0629
| Unknown | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
AT4G21680 | PredictedAffinity Capture-MS | FSW = 0.0526
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT1G80050 | Predictedinterologs mapping | FSW = 0.0991
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT3G20970 | Predictedinterologs mapping | FSW = 0.0196
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT5G02730 | PredictedAffinity Capture-MS | FSW = 0.0641
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G14580 | PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.0185
| Unknown | ATPRB1 |
AT2G38960 | PredictedSynthetic Rescueinterologs mapping | FSW = 0.0225
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT5G15250 | Predictedtwo hybrid | FSW = 0.0150
| Unknown | FTSH6 (FTSH PROTEASE 6) ATP-DEPENDENT PEPTIDASE/ ATPASE/ METALLOPEPTIDASE/ PEPTIDASE/ ZINC ION BINDING |
AT4G10920 | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT2G42120 | PredictedAffinity Capture-Westerntwo hybridinterologs mappingSynthetic Lethality | FSW = 0.1195
| Unknown | POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT4G02020 | PredictedPhenotypic SuppressionPhenotypic Enhancement | FSW = 0.0286
| Unknown | SWN (SWINGER) TRANSCRIPTION FACTOR |
AT1G19730 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G08190 | PredictedPhenotypic Enhancement | FSW = 0.0305
| Unknown | VACUOLAR ASSEMBLY PROTEIN PUTATIVE (VPS41) |
AT3G61740 | PredictedPhenotypic Enhancement | FSW = 0.0898
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G42400 | PredictedPhenotypic Enhancement | FSW = 0.0227
| Unknown | SDG25 (SET DOMAIN PROTEIN 25) |
AT1G68020 | Predictedsynthetic growth defect | FSW = 0.0143
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G09270 | PredictedAffinity Capture-MS | FSW = 0.0548
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G31170 | PredictedAffinity Capture-MS | FSW = 0.1233
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G52500 | Predictedinterologs mapping | FSW = 0.1079
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G63370 | PredictedReconstituted Complex | FSW = 0.0169
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT2G03690 | PredictedAffinity Capture-Western | FSW = 0.0571
| Unknown | COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN |
AT2G15790 | PredictedAffinity Capture-MS | FSW = 0.0261
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0291
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0422
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G38490 | PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT2G48100 | Predictedinterologs mappinginterologs mappingPhenotypic Enhancement | FSW = 0.0829
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G13720 | PredictedSynthetic Lethalityinterologs mappinginterologs mappingSynthetic Lethalityinterologs mapping | FSW = 0.2800
| Unknown | PRA8 |
AT3G27110 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | PEPTIDASE M48 FAMILY PROTEIN |
AT3G27580 | PredictedAffinity Capture-MS | FSW = 0.0513
| Unknown | ATPK7 KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G59020 | PredictedAffinity Capture-MS | FSW = 0.0414
| Unknown | BINDING / PROTEIN TRANSPORTER |
AT3G59540 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0790
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G04695 | PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G04885 | PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING |
AT4G14670 | PredictedAffinity Capture-MS | FSW = 0.0865
| Unknown | CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G21480 | PredictedAffinity Capture-MS | FSW = 0.0176
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G22790 | PredictedAffinity Capture-MS | FSW = 0.0330
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT4G25150 | PredictedAffinity Capture-MS | FSW = 0.0427
| Unknown | ACID PHOSPHATASE PUTATIVE |
AT5G01390 | PredictedAffinity Capture-MS | FSW = 0.0607
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G14050 | PredictedAffinity Capture-MS | FSW = 0.0420
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G64240 | PredictedAffinity Capture-MS | FSW = 0.0536
| Unknown | ATMC3 (METACASPASE 3) CYSTEINE-TYPE ENDOPEPTIDASE |
AT2G01600 | PredictedSynthetic Lethality | FSW = 0.1556
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN |
AT3G50780 | Predictedsynthetic growth defect | FSW = 0.0721
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454