Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G79440 - ( ALDH5F1 3-chloroallyl aldehyde dehydrogenase/ NAD or NADH binding / succinate-semialdehyde dehydrogenase )

11 Proteins interacs with AT1G79440
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33210

Predicted

pull down

FSW = 0.0131

Class C:

plastid

mitochondrion

HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT3G48000

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7399

Class C:

plastid

mitochondrion

ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ATP BINDING / ALDEHYDE DEHYDROGENASE (NAD)
AT3G48170

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2162

Class C:

plastid

ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT3G66658

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5046

Class C:

plastid

ALDH22A1 (ALDEHYDE DEHYDROGENASE 22A1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT1G74920

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.7162

Class C:

plastid

ALDH10A8 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT2G27710

Predicted

two hybrid

interaction prediction

FSW = 0.0184

Class C:

nucleus

60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT2G14170

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5346

Class C:

mitochondrion

ALDH6B2 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE (ACYLATING)/ OXIDOREDUCTASE
AT1G23800

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6270

Class C:

mitochondrion

ALDH2B7 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD)
AT1G54100

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6909

Unknown

ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT3G24503

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.8548

Unknown

ALDH2C4 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD)/ CONIFERYL-ALDEHYDE DEHYDROGENASE
AT2G24270

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6909

Unknown

ALDH11A3 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (NADP+)

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454