Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G79450 - ( ALIS5 (ALA-Interacting Subunit 5) )
31 Proteins interacs with AT1G79450Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G54270 | PredictedAffinity Capture-MS | FSW = 0.0646
| Class C:plasma membrane | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT2G18180 | Predictedinterologs mapping | FSW = 0.0580
| Class C:plasma membrane | SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHOGLYCERIDE TRANSFER PROTEIN PUTATIVE |
AT1G51980 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1422
| Unknown | MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT PUTATIVE |
AT3G26590 | Predictedbiochemical | FSW = 0.0110
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT2G04940 | PredictedSynthetic Lethality | FSW = 0.0552
| Unknown | SCRAMBLASE-RELATED |
AT5G51070 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.1046
| Unknown | ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G07180 | PredictedAffinity Capture-MS | FSW = 0.0728
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT1G70580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0549
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT2G47640 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0098
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT4G13980 | Predictedbiochemical | FSW = 0.0151
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT3G66656 | PredictedAffinity Capture-MS | FSW = 0.0965
| Unknown | AGL91 TRANSCRIPTION FACTOR |
AT3G10920 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0099
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT1G01310 | Predictedsynthetic growth defect | FSW = 0.0571
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33720 | PredictedAffinity Capture-MS | FSW = 0.0715
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G10610 | PredictedAffinity Capture-MS | FSW = 0.1516
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17C) |
AT4G17190 | PredictedSynthetic Lethality | FSW = 0.0259
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G21370 | PredictedSynthetic Lethality | FSW = 0.0529
| Unknown | UNKNOWN PROTEIN |
AT1G06790 | PredictedSynthetic Lethality | FSW = 0.0145
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G34460 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0824
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.0311
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0059
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT3G06470 | Predictedbiochemical | FSW = 0.0364
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT4G14240 | Predictedbiochemical | FSW = 0.0124
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT4G29910 | PredictedAffinity Capture-MS | FSW = 0.0708
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT5G50130 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1422
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G52820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0121
| Unknown | WD-40 REPEAT FAMILY PROTEIN / NOTCHLESS PROTEIN PUTATIVE |
AT5G57240 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1504
| Unknown | ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C) OXYSTEROL BINDING |
AT1G54320 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1502
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G46150 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0437
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT1G16360 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1222
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT3G12740 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1287
| Unknown | ALIS1 (ALA-INTERACTING SUBUNIT 1) PHOSPHOLIPID TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454