Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G79650 - ( RAD23 damaged DNA binding )

11 Proteins interacs with AT1G79650
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0032

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT4G33090

Predicted

Affinity Capture-MS

FSW = 0.0205

Unknown

APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT1G77210

Predicted

Affinity Capture-MS

FSW = 0.0634

Unknown

SUGAR TRANSPORTER PUTATIVE
AT1G28060

Predicted

two hybrid

FSW = 0.0613

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN
AT1G16190

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1039

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G38470

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1001

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT1G56440

Predicted

two hybrid

FSW = 0.2382

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE-RELATED
AT4G20325

Predicted

two hybrid

FSW = 0.0600

Unknown

UNKNOWN PROTEIN
AT5G16870

Predicted

two hybrid

FSW = 0.1739

Unknown

AMINOACYL-TRNA HYDROLASE
AT5G63550

Predicted

two hybrid

FSW = 0.0972

Unknown

EXPRESSED IN GUARD CELL CULTURED CELL CONTAINS INTERPRO DOMAIN/S DEK C-TERMINAL (INTERPROIPR014876) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G487101) HAS 115795 BLAST HITS TO 50006 PROTEINS IN 1760 SPECIES ARCHAE - 230 BACTERIA - 10317 METAZOA - 57515 FUNGI - 12631 PLANTS - 4292 VIRUSES - 1075 OTHER EUKARYOTES - 29735 (SOURCE NCBI BLINK)
AT4G38630

Predicted

two hybrid

Co-expression

FSW = 0.0185

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454