Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G79650 - ( RAD23 damaged DNA binding )
11 Proteins interacs with AT1G79650Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0032
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G33090 | PredictedAffinity Capture-MS | FSW = 0.0205
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT1G77210 | PredictedAffinity Capture-MS | FSW = 0.0634
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT1G28060 | Predictedtwo hybrid | FSW = 0.0613
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
AT1G16190 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1039
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G38470 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1001
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT1G56440 | Predictedtwo hybrid | FSW = 0.2382
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE-RELATED |
AT4G20325 | Predictedtwo hybrid | FSW = 0.0600
| Unknown | UNKNOWN PROTEIN |
AT5G16870 | Predictedtwo hybrid | FSW = 0.1739
| Unknown | AMINOACYL-TRNA HYDROLASE |
AT5G63550 | Predictedtwo hybrid | FSW = 0.0972
| Unknown | EXPRESSED IN GUARD CELL CULTURED CELL CONTAINS INTERPRO DOMAIN/S DEK C-TERMINAL (INTERPROIPR014876) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G487101) HAS 115795 BLAST HITS TO 50006 PROTEINS IN 1760 SPECIES ARCHAE - 230 BACTERIA - 10317 METAZOA - 57515 FUNGI - 12631 PLANTS - 4292 VIRUSES - 1075 OTHER EUKARYOTES - 29735 (SOURCE NCBI BLINK) |
AT4G38630 | Predictedtwo hybridCo-expression | FSW = 0.0185
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454