Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G79730 - ( ELF7 (EARLY FLOWERING 7) )
73 Proteins interacs with AT1G79730Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590 | PredictedSynthetic Lethality | FSW = 0.0078
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G22630 | PredictedAffinity Capture-MS | FSW = 0.0705
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G36750 | Predictedtwo hybrid | FSW = 0.0092
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT5G45130 | PredictedPhenotypic Enhancement | FSW = 0.0769
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT3G22110 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0830
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.0558
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G13710 | PredictedPhenotypic Enhancement | FSW = 0.0376
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT2G28190 | PredictedPhenotypic Enhancement | FSW = 0.0996
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT4G35800 | PredictedAffinity Capture-WesternAffinity Capture-MSSynthetic Lethalityinteraction prediction | FSW = 0.2183
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G23630 | PredictedPhenotypic Enhancement | FSW = 0.0989
| Unknown | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
AT1G11890 | PredictedPhenotypic Enhancement | FSW = 0.1398
| Unknown | SEC22 TRANSPORTER |
AT1G53750 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0390
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G47010 | PredictedPhenotypic Suppression | FSW = 0.0171
| Unknown | LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE |
AT5G19180 | PredictedPhenotypic Suppression | FSW = 0.0408
| Unknown | ECR1 (E1 C-TERMINAL RELATED 1) NEDD8 ACTIVATING ENZYME/ PROTEIN HETERODIMERIZATION/ SMALL PROTEIN ACTIVATING ENZYME |
AT2G44680 | PredictedPhenotypic EnhancementAffinity Capture-MS | FSW = 0.1021
| Unknown | CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE |
AT1G21700 | PredictedPhenotypic Enhancement | FSW = 0.0275
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT3G44530 | PredictedPhenotypic Enhancement | FSW = 0.1601
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G35910 | Predictedsynthetic growth defect | FSW = 0.1381
| Unknown | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT2G43810 | PredictedPhenotypic Enhancement | FSW = 0.1347
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT4G10710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.1706
| Unknown | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT4G10670 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.1603
| Unknown | GTC2 |
AT5G09860 | PredictedAffinity Capture-WesternAffinity Capture-WesternSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.0831
| Unknown | NUCLEAR MATRIX PROTEIN-RELATED |
AT4G31720 | PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT2G18760 | PredictedPhenotypic Suppression | FSW = 0.0611
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G38560 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.2419
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT4G08350 | PredictedSynthetic RescueAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.1520
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT5G08630 | PredictedPhenotypic Enhancement | FSW = 0.0352
| Unknown | DDT DOMAIN-CONTAINING PROTEIN |
AT2G36740 | PredictedSynthetic Lethality | FSW = 0.1997
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MSAffinity Capture-WesternSynthetic Rescue | FSW = 0.1493
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT2G06210 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5198
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT1G75510 | PredictedCo-purificationAffinity Capture-Western | FSW = 0.3520
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT5G66020 | PredictedPhenotypic Enhancement | FSW = 0.1149
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT3G28730 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.1479
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT2G21790 | Predictedinterologs mapping | FSW = 0.0241
| Unknown | RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT1G15780 | PredictedAffinity Capture-Westernsynthetic growth defect | FSW = 0.1114
| Unknown | UNKNOWN PROTEIN |
AT1G49540 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1975
| Unknown | NUCLEOTIDE BINDING |
AT1G51710 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1461
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G61040 | PredictedSynthetic Rescueco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationSynthetic Rescueinteraction prediction | FSW = 0.3927
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G16800 | PredictedAffinity Capture-MS | FSW = 0.0692
| Unknown | TRNA-SPLICING ENDONUCLEASE POSITIVE EFFECTOR-RELATED |
AT1G34150 | PredictedPhenotypic Suppression | FSW = 0.1580
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT1G51310 | PredictedPhenotypic Suppression | FSW = 0.1058
| Unknown | TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE |
AT1G52740 | PredictedPhenotypic Enhancement | FSW = 0.1485
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.1233
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT2G02760 | PredictedAffinity Capture-Western | FSW = 0.1814
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G28390 | PredictedPhenotypic Enhancement | FSW = 0.0654
| Unknown | SAND FAMILY PROTEIN |
AT2G44150 | PredictedSynthetic LethalityPhenotypic Enhancementsynthetic growth defect | FSW = 0.1289
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G18860 | PredictedPhenotypic Enhancement | FSW = 0.1035
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G22590 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3599
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G54380 | PredictedPhenotypic Enhancement | FSW = 0.1615
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT4G38630 | PredictedSynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.0464
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G10260 | PredictedPhenotypic Enhancement | FSW = 0.1624
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G13680 | PredictedSynthetic LethalitySynthetic LethalityCo-expression | FSW = 0.2693
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT5G42000 | PredictedPhenotypic Enhancement | FSW = 0.0948
| Unknown | ORMDL FAMILY PROTEIN |
AT5G48120 | PredictedPhenotypic Enhancement | FSW = 0.0739
| Unknown | BINDING |
AT5G50320 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic EnhancementCo-expression | FSW = 0.2296
| Unknown | ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE |
AT5G55310 | PredictedPhenotypic Enhancement | FSW = 0.0618
| Unknown | TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I |
AT5G58410 | Predictedsynthetic growth defect | FSW = 0.1984
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G61150 | Predictedco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionationSynthetic Rescueinteraction predictionCo-expression | FSW = 0.3156
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT5G61220 | Predictedsynthetic growth defect | FSW = 0.0260
| Unknown | COMPLEX 1 FAMILY PROTEIN / LVR FAMILY PROTEIN |
AT2G23070 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1118
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G43790 | PredictedAffinity Capture-Western | FSW = 0.0367
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT3G58560 | PredictedSynthetic LethalitySynthetic LethalityAffinity Capture-Western | FSW = 0.1084
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G39520 | PredictedAffinity Capture-MS | FSW = 0.0124
| Unknown | GTP-BINDING PROTEIN PUTATIVE |
AT5G10270 | PredictedSynthetic Lethality | FSW = 0.1914
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT5G58003 | PredictedSynthetic Lethality | FSW = 0.1818
| Unknown | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE |
AT5G63670 | PredictedSynthetic Lethality | FSW = 0.2745
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT5G67150 | PredictedAffinity Capture-MS | FSW = 0.0132
| Unknown | TRANSFERASE FAMILY PROTEIN |
AT2G23080 | PredictedAffinity Capture-MS | FSW = 0.0587
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G19070 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE) N-ACYLTRANSFERASE/ HYDROXYCINNAMOYLTRANSFERASE/ SPERMIDINECAFFEOYL COA N-ACYLTRANSFERASE/ SPERMIDINECOUMAROYL COA N-ACYLTRANSFERASE/ SPERMIDINEFERULOYL COA N-ACYLTRANSFERASE/ SPERMIDINESINAPOYL COA N-ACYL |
AT1G14400 | PredictedAffinity Capture-Western | FSW = 0.1071
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT1G20320 | PredictedSynthetic Lethality | FSW = 0.2506
| Unknown | NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN |
AT5G08565 | PredictedSynthetic Lethality | FSW = 0.1928
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT1G64750 | PredictedSynthetic LethalityCo-expression | FSW = 0.0890
| Unknown | ATDSS1(I) (ARABIDOPSIS THALIANA DELETION OF SUV3 SUPRESSOR 1(I)) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454