Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G79880 - ( La domain-containing protein )
19 Proteins interacs with AT1G79880Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G07590 | PredictedSynthetic Lethality | FSW = 0.0227
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT3G03920 | PredictedAffinity Capture-MS | FSW = 0.0430
| Unknown | GAR1 RNA-BINDING REGION FAMILY PROTEIN |
AT2G41500 | PredictedAffinity Capture-MS | FSW = 0.0748
| Unknown | EMB2776 NUCLEOTIDE BINDING |
AT3G55620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0145
| Unknown | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
AT2G43810 | PredictedSynthetic Lethality | FSW = 0.0278
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT2G03870 | PredictedSynthetic Lethality | FSW = 0.0615
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT3G18610 | Predictedin vivo | FSW = 0.0462
| Unknown | ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1) NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT5G48870 | PredictedSynthetic Lethality | FSW = 0.0727
| Unknown | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0029
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT1G15310 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1118
| Unknown | ATHSRP54A (ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G67650 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1739
| Unknown | 7S RNA BINDING |
AT3G01160 | PredictedAffinity Capture-MS | FSW = 0.0437
| Unknown | UNKNOWN PROTEIN |
AT2G36930 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0193
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT3G60240 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0245
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT1G29550 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0976
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE |
AT1G17370 | PredictedAffinity Capture-MS | FSW = 0.0580
| Unknown | UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B) MRNA 3-UTR BINDING |
AT1G08880 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | H2AXA DNA BINDING |
AT5G14600 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0863
| Unknown | TRNA (ADENINE-N1-)-METHYLTRANSFERASE |
AT2G45730 | Predictedinterologs mapping | FSW = 0.0933
| Unknown | EUKARYOTIC INITIATION FACTOR 3 GAMMA SUBUNIT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454