Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G79890 - ( helicase-related )
40 Proteins interacs with AT1G79890Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G02520 | PredictedPhenotypic Suppression | FSW = 0.1277
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G11630 | PredictedPhenotypic Enhancement | FSW = 0.0347
| Unknown | 2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1) |
AT1G73820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1223
| Unknown | SSU72-LIKE FAMILY PROTEIN |
AT5G52640 | Predictedtwo hybrid | FSW = 0.0128
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT4G05190 | PredictedSynthetic Lethality | FSW = 0.3379
| Unknown | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
AT5G67270 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.2139
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT2G24490 | PredictedPhenotypic Enhancement | FSW = 0.1181
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT1G44900 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.0589
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT1G17680 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT1G07370 | PredictedPhenotypic Enhancement | FSW = 0.1384
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT1G55750 | PredictedPhenotypic Enhancement | FSW = 0.0141
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT3G47690 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2337
| Unknown | ATEB1A MICROTUBULE BINDING |
AT3G25980 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1356
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT2G36200 | Predictedinteraction predictionSynthetic LethalitySynthetic Lethality | FSW = 0.2798
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT1G04730 | Predictedinteraction predictionSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2346
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G07270 | Predictedsynthetic growth defect | FSW = 0.1105
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT1G08780 | Predictedinteraction predictionSynthetic LethalityPhenotypic Enhancement | FSW = 0.2119
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G29990 | Predictedinteraction predictionSynthetic LethalityPhenotypic Enhancement | FSW = 0.1726
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G63160 | PredictedPhenotypic Enhancement | FSW = 0.0843
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
AT2G44580 | Predictedinteraction predictionSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.3071
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G22480 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1704
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT4G25120 | Predictedinteraction predictionSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.0674
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT4G27180 | PredictedSynthetic Lethality | FSW = 0.3199
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT5G14530 | PredictedAffinity Capture-MS | FSW = 0.1178
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G23290 | Predictedinteraction predictionSynthetic LethalityPhenotypic Enhancement | FSW = 0.1970
| Unknown | PDF5 (PREFOLDIN 5) UNFOLDED PROTEIN BINDING |
AT5G26680 | PredictedSynthetic LethalitySynthetic Lethalitysynthetic growth defectPhenotypic Enhancementinteraction prediction | FSW = 0.0703
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G47430 | PredictedAffinity Capture-MS | FSW = 0.0776
| Unknown | ZINC ION BINDING |
AT5G49510 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1824
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT2G33560 | PredictedSynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.1733
| Unknown | SPINDLE CHECKPOINT PROTEIN-RELATED |
AT3G26020 | PredictedSynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.2511
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT4G38630 | PredictedPhenotypic Enhancement | FSW = 0.1366
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G27740 | PredictedPhenotypic Enhancement | FSW = 0.1715
| Unknown | EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G41880 | PredictedPhenotypic Enhancement | FSW = 0.0268
| Unknown | POLA3 DNA PRIMASE |
AT5G48120 | PredictedPhenotypic Enhancement | FSW = 0.1782
| Unknown | BINDING |
AT4G17410 | PredictedAffinity Capture-MS | FSW = 0.1035
| Unknown | ZINC ION BINDING |
AT1G73840 | PredictedAffinity Capture-MS | FSW = 0.1701
| Unknown | ESP1 (ENHANCED SILENCING PHENOTYPE 1) |
AT5G16270 | PredictedSynthetic Lethality | FSW = 0.2011
| Unknown | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) |
AT1G13460 | PredictedSynthetic Lethality | FSW = 0.0776
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT1G34150 | PredictedSynthetic Lethality | FSW = 0.1117
| Unknown | TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT5G54670 | Predictedinteraction prediction | FSW = 0.2851
| Unknown | ATK3 (ARABIDOPSIS THALIANA KINESIN 3) ATPASE/ MICROTUBULE BINDING / MICROTUBULE MOTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454