Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G79920 - ( ATP binding )
30 Proteins interacs with AT1G79920Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G14960 | PredictedAffinity Capture-MS | FSW = 0.0108
| Class C:plasma membrane | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G27090 | PredictedSynthetic Lethality | FSW = 0.0095
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L14 (RPL14B) |
AT3G12580 | PredictedAffinity Capture-MSin vivo | FSW = 0.0462
| Class C:plasma membrane | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT5G14720 | Predictedtwo hybrid | FSW = 0.0256
| Class C:plasma membrane | PROTEIN KINASE FAMILY PROTEIN |
AT5G03160 | Predictedin vitrotwo hybrid | FSW = 0.0994
| Class C:plasma membrane | ATP58IPK (ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK) BINDING / HEAT SHOCK PROTEIN BINDING |
AT1G64740 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0529
| Class C:plasma membrane | TUA1 (ALPHA-1 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G02450 | Predictedin vivo | FSW = 0.0772
| Class C:plasma membrane | GLYCINE-RICH PROTEIN |
AT5G02490 | Predictedin vivoAffinity Capture-MS | FSW = 0.1098
| Class C:plasma membrane | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT1G79930 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.1889
| Class C:plasma membrane | HSP91 ATP BINDING |
AT1G56190 | Predictedin vitro | FSW = 0.0147
| Unknown | PHOSPHOGLYCERATE KINASE PUTATIVE |
AT5G63110 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0165
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT5G44500 | Predictedtwo hybrid | FSW = 0.0038
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE |
AT3G19840 | PredictedAffinity Capture-MS | FSW = 0.0545
| Unknown | FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN |
AT3G52250 | PredictedAffinity Capture-MS | FSW = 0.0093
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT5G16820 | Predictedin vitroReconstituted Complex | FSW = 0.0811
| Unknown | HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G20510 | PredictedReconstituted Complex | FSW = 0.0099
| Unknown | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
AT3G46010 | PredictedAffinity Capture-MSin vitro | FSW = 0.0407
| Unknown | ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) ACTIN BINDING |
AT2G04660 | Predictedtwo hybrid | FSW = 0.0230
| Unknown | APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G04730 | PredictedAffinity Capture-MS | FSW = 0.0122
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT2G36360 | PredictedAffinity Capture-MS | FSW = 0.0664
| Unknown | KELCH REPEAT-CONTAINING PROTEIN |
AT5G59890 | PredictedAffinity Capture-MStwo hybridReconstituted Complex | FSW = 0.0174
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
AT4G08320 | Predictedin vitro | FSW = 0.0097
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT4G15802 | Predictedin vitroin vivo | FSW = 0.0994
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S HEAT SHOCK FACTOR BINDING 1 (INTERPROIPR009643) HAS 178 BLAST HITS TO 178 PROTEINS IN 62 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 122 FUNGI - 0 PLANTS - 37 VIRUSES - 0 OTHER EUKARYOTES - 19 (SOURCE NCBI BLINK) |
AT4G30480 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0365
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT5G01390 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0708
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT5G02150 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.1504
| Unknown | BINDING |
AT2G35390 | Predictedtwo hybrid | FSW = 0.0165
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT4G09310 | PredictedAffinity Capture-MS | FSW = 0.0306
| Unknown | SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN |
AT5G06460 | Predictedin vitro | FSW = 0.0282
| Unknown | ATUBA2 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE |
AT1G11660 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.0416
| Unknown | HEAT SHOCK PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454