Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G80070 - ( SUS2 (ABNORMAL SUSPENSOR 2) )
89 Proteins interacs with AT1G80070| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G18165
   | Experimental | FSW = 0.1563
| Class B:unclearplastidnucleusClass D:nucleus (p = 0.78) | MOS4 (MODIFIER OF SNC14) |
| AT1G06220
| Experimental | FSW = 0.1558
| Class B:plastidplasma membrane | MEE5 (MATERNAL EFFECT EMBRYO ARREST 5) GTP BINDING / GTPASE/ TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
| AT1G06210
| Experimentalinteraction detection method | FSW = 0.0107
| Unknown | VHS DOMAIN-CONTAINING PROTEIN / GAT DOMAIN-CONTAINING PROTEIN |
| AT3G02520
| Predictedtwo hybrid | FSW = 0.0077
| Class C:plastid | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT1G09760
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4468
| Class C:plastid | U2A (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN A) PROTEIN BINDING |
| AT1G09770
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4502
| Class C:plastid | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
| AT5G64270
| PredictedAffinity Capture-MS | FSW = 0.3593
| Class C:plastid | SPLICING FACTOR PUTATIVE |
| AT5G16630
| PredictedAffinity Capture-MS | FSW = 0.0268
| Class C:plastid | RAD4 DAMAGED DNA BINDING |
| AT1G22170
| Predictedtwo hybridinteraction prediction | FSW = 0.0349
| Class C:plastid | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
| AT2G25830
| Predictedtwo hybrid | FSW = 0.0109
| Class C:plastid | YEBC-RELATED |
| AT3G55200 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2675
| Class C:plastid | SPLICING FACTOR PUTATIVE |
| AT2G33340
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationinteraction prediction | FSW = 0.3839
| Class C:plastid | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
| AT2G47250
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0769
| Class C:plastid | RNA HELICASE PUTATIVE |
| AT3G07590
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3743
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
| AT4G02840
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4412
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
| AT2G33730
| PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0394
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
| AT1G20960
| Predictedtwo hybridSynthetic RescueSynthetic LethalityCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSProtein-peptidesynthetic growth defectinteraction predictionCo-expression | FSW = 0.7091
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT3G58510
| PredictedSynthetic Rescue | FSW = 0.0144
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
| AT1G35160
| Predictedtwo hybridGene neighbors method | FSW = 0.0134
| Unknown | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT2G42520
| PredictedSynthetic Rescue | FSW = 0.0155
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
| AT5G08290
| PredictedAffinity Capture-MS | FSW = 0.4417
| Unknown | YLS8 CATALYTIC |
| AT4G05190
| Predictedtwo hybridCo-expression | FSW = 0.0077
| Unknown | ATK5 (ARABIDOPSIS THALIANA KINESIN 5) MICROTUBULE MOTOR |
| AT1G16610
| PredictedAffinity Capture-MS | FSW = 0.1076
| Unknown | SR45 RNA BINDING / PROTEIN BINDING |
| AT3G19840
| Predictedtwo hybrid | FSW = 0.2372
| Unknown | FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN |
| AT3G50670
| Predictedtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1232
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT2G47640
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4082
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
| AT2G41500
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3806
| Unknown | EMB2776 NUCLEOTIDE BINDING |
| AT2G43810
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1326
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
| AT1G19120
| PredictedAffinity Capture-MS | FSW = 0.1216
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT2G03870
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1598
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT4G30220
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5185
| Unknown | RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) |
| AT4G20440
| PredictedAffinity Capture-MS | FSW = 0.0166
| Unknown | SMB (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B) |
| AT2G23930
| PredictedAffinity Capture-MS | FSW = 0.5079
| Unknown | SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) |
| AT5G27720
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2270
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
| AT1G20580
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.5779
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT1G28060
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3730
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
| AT5G44200
| PredictedAffinity Capture-MS | FSW = 0.0856
| Unknown | CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING |
| AT4G38130
| Predictedtwo hybridShared biological functionCo-expression | FSW = 0.0019
| Unknown | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
| AT3G62310
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0900
| Unknown | RNA HELICASE PUTATIVE |
| AT1G04510
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.4414
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G63490
| Predictedtwo hybrid | FSW = 0.0134
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN |
| AT1G03330
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2967
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE |
| AT1G76860
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2597
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT4G30330
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3872
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
| AT2G18740
| PredictedAffinity Capture-MS | FSW = 0.3745
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
| AT1G21190
| PredictedAffinity Capture-MS | FSW = 0.2049
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
| AT5G48870
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1920
| Unknown | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
| AT5G05620
| Predictedtwo hybrid | FSW = 0.0184
| Unknown | GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2) GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
| AT3G26560
| PredictedSynthetic RescueCo-expression | FSW = 0.2017
| Unknown | ATP-DEPENDENT RNA HELICASE PUTATIVE |
| AT3G25840
| PredictedSynthetic Rescue | FSW = 0.0574
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT4G15900
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1846
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT2G43770
| Predictedin vivoAffinity Capture-MSCo-expression | FSW = 0.0818
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G03430
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vivoAffinity Capture-MSSynthetic Lethalityinteraction prediction | FSW = 0.4177
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
| AT1G03140
| PredictedSynthetic LethalitySynthetic Rescue | FSW = 0.0702
| Unknown | SPLICING FACTOR PRP18 FAMILY PROTEIN |
| AT1G08840 | Predictedtwo hybrid | FSW = 0.0043
| Unknown | EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING |
| AT1G10580
| PredictedSynthetic RescueSynthetic LethalitySynthetic LethalityPhenotypic Suppression | FSW = 0.2372
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G14640
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4110
| Unknown | SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN |
| AT1G17070
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mapping | FSW = 0.3208
| Unknown | D111/G-PATCH DOMAIN-CONTAINING PROTEIN |
| AT1G49760
| PredictedAffinity Capture-MS | FSW = 0.1019
| Unknown | PAB8 (POLY(A) BINDING PROTEIN 8) RNA BINDING / TRANSLATION INITIATION FACTOR |
| AT1G52980
| Predictedtwo hybridinteraction prediction | FSW = 0.0354
| Unknown | GTP-BINDING FAMILY PROTEIN |
| AT1G60170
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.4720
| Unknown | EMB1220 (EMBRYO DEFECTIVE 1220) |
| AT1G65660
| PredictedSynthetic Lethalityco-fractionationCo-fractionationSynthetic Lethalityco-fractionationCo-fractionation | FSW = 0.1526
| Unknown | SMP1 (SWELLMAP 1) NUCLEIC ACID BINDING / SINGLE-STRANDED RNA BINDING |
| AT1G66510
| Predictedco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-fractionationAffinity Capture-WesternColocalizationinteraction prediction | FSW = 0.1481
| Unknown | AAR2 PROTEIN FAMILY |
| AT1G76700
| Predictedtwo hybridinteraction prediction | FSW = 0.0217
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT1G80930
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2154
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
| AT2G32600
| PredictedAffinity Capture-MS | FSW = 0.2465
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
| AT3G03340
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2505
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
| AT3G05760
| PredictedAffinity Capture-MS | FSW = 0.1801
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT3G59410
| PredictedAffinity Capture-MS | FSW = 0.0179
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT4G21110
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2317
| Unknown | G10 FAMILY PROTEIN |
| AT4G21660
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4118
| Unknown | PROLINE-RICH SPLICEOSOME-ASSOCIATED (PSP) FAMILY PROTEIN |
| AT5G06160
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3881
| Unknown | ATO (ATROPOS) NUCLEIC ACID BINDING / ZINC ION BINDING |
| AT5G13010
| PredictedSynthetic RescueSynthetic LethalitySynthetic Lethality | FSW = 0.0656
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT5G22840
| PredictedSynthetic Lethality | FSW = 0.0293
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT5G28740
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2744
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
| AT5G41770
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3717
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
| AT3G55220
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4959
| Unknown | SPLICING FACTOR PUTATIVE |
| AT4G05320
| PredictedReconstituted Complex | FSW = 0.0045
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
| AT4G09760
| Predictedtwo hybrid | FSW = 0.0378
| Unknown | CHOLINE KINASE PUTATIVE |
| AT4G27180
| Predictedtwo hybrid | FSW = 0.0157
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
| AT5G46400
| Predictedtwo hybridAffinity Capture-MS | FSW = 0.3612
| Unknown | PRP39-2 |
| AT3G16650
| PredictedAffinity Capture-MS | FSW = 0.2034
| Unknown | PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2) |
| AT3G13210
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1596
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
| AT1G22760
| PredictedAffinity Capture-MS | FSW = 0.1223
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
| AT2G17530
| PredictedSynthetic Lethality | FSW = 0.0340
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
| AT2G26830
| Predictedtwo hybrid | FSW = 0.0194
| Unknown | EMB1187 (EMBRYO DEFECTIVE 1187) KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
| AT1G44910
| Predictedtwo hybridCo-expression | FSW = 0.1786
| Unknown | PROTEIN BINDING |
| AT5G51300
| Predictedinteraction predictionCo-expression | FSW = 0.0833
| Unknown | SPLICING FACTOR-RELATED |
| AT4G38780
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0810
| Unknown | SPLICING FACTOR PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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