Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G80080 - ( TMM (TOO MANY MOUTHS) protein binding / receptor )
14 Proteins interacs with AT1G80080Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0064
| Class D:plasma membrane (p = 0.25)cytosol (p = 0.67) | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G25120 | PredictedGene fusion method | FSW = 0.4211
| Unknown | CYP71B11 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT3G53110 | PredictedGene fusion method | FSW = 0.0285
| Unknown | LOS4 (LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4) ATP-DEPENDENT HELICASE/ RNA HELICASE/ RNA-DEPENDENT ATPASE |
AT5G25180 | PredictedGene fusion method | FSW = 0.5275
| Unknown | CYP71B14 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT1G29800 | PredictedGene fusion method | FSW = 0.0471
| Unknown | PHOSPHOINOSITIDE BINDING / ZINC ION BINDING |
AT5G24950 | PredictedGene fusion method | FSW = 0.5939
| Unknown | CYP71A15 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT1G01480 | PredictedGene fusion method | FSW = 0.0585
| Unknown | ACS2 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE |
AT3G01900 | PredictedGene fusion method | FSW = 0.5568
| Unknown | CYP94B2 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT1G08930 | PredictedGene fusion method | FSW = 0.0314
| Unknown | ERD6 (EARLY RESPONSE TO DEHYDRATION 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGAR TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G25130 | PredictedGene fusion method | FSW = 0.5275
| Unknown | CYP71B12 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT2G36360 | PredictedGene fusion method | FSW = 0.0672
| Unknown | KELCH REPEAT-CONTAINING PROTEIN |
AT2G24270 | PredictedGene fusion method | FSW = 0.0672
| Unknown | ALDH11A3 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (NADP+) |
AT5G25140 | PredictedGene fusion method | FSW = 0.5714
| Unknown | CYP71B13 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT1G16680 | PredictedGene fusion method | FSW = 0.0410
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / S-LOCUS PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454