Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G80190 - ( PSF1 (PARTNER OF SLD FIVE 1) )
36 Proteins interacs with AT1G80190Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G48860 | PredictedAffinity Capture-MS | FSW = 0.0416
| Class C:plastid | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT1G53850 | PredictedAffinity Capture-MS | FSW = 0.0237
| Unknown | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G07680 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1769
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT2G06510 | PredictedAffinity Capture-Western | FSW = 0.0240
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT1G02780 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1067
| Unknown | EMB2386 (EMBRYO DEFECTIVE 2386) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G14120 | PredictedAffinity Capture-MS | FSW = 0.0372
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT5G27630 | PredictedAffinity Capture-MS | FSW = 0.0527
| Unknown | ACBP5 (ACYL-COA BINDING PROTEIN 5) ACYL-COA BINDING |
AT4G35950 | Predictedinterologs mapping | FSW = 0.0300
| Unknown | ARAC6 (ARABIDOPSIS RAC-LIKE 6) GTP BINDING |
AT5G22780 | PredictedAffinity Capture-Westerninterologs mapping | FSW = 0.0333
| Unknown | ADAPTIN FAMILY PROTEIN |
AT1G03930 | PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT2G34440 | PredictedAffinity Capture-MS | FSW = 0.0450
| Unknown | AGL29 (AGAMOUS-LIKE 29) TRANSCRIPTION FACTOR |
AT1G44900 | PredictedAffinity Capture-Western | FSW = 0.0467
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT1G07370 | PredictedAffinity Capture-Western | FSW = 0.0032
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT3G12530 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0412
| Unknown | PSF2 |
AT4G10920 | PredictedAffinity Capture-MS | FSW = 0.0490
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
AT5G49010 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridinterologs mappingAffinity Capture-Westerntwo hybridAffinity Capture-MSinteraction prediction | FSW = 0.0581
| Unknown | SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0601
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G34460 | PredictedAffinity Capture-MS | FSW = 0.0158
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G63370 | PredictedAffinity Capture-MS | FSW = 0.0433
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT2G14560 | PredictedAffinity Capture-MS | FSW = 0.0566
| Unknown | LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) |
AT2G30650 | PredictedPhenotypic Enhancement | FSW = 0.0121
| Unknown | CATALYTIC |
AT2G34250 | PredictedAffinity Capture-MS | FSW = 0.0702
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0262
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G37925 | PredictedAffinity Capture-MS | FSW = 0.0952
| Unknown | COPT4 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT3G04710 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.0564
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G13210 | PredictedAffinity Capture-MS | FSW = 0.0345
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT3G62770 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSSynthetic RescueCo-crystal StructureCo-crystal StructureAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternCo-crystal StructureSynthetic Rescue | FSW = 0.1236
| Unknown | ATATG18A |
AT4G00980 | PredictedAffinity Capture-MS | FSW = 0.0837
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT4G04950 | PredictedAffinity Capture-MS | FSW = 0.0355
| Unknown | THIOREDOXIN FAMILY PROTEIN |
AT5G22110 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0507
| Unknown | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING |
AT5G24840 | PredictedAffinity Capture-MS | FSW = 0.0463
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G26250 | PredictedAffinity Capture-MS | FSW = 0.0301
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G45900 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | APG7 (AUTOPHAGY 7) APG8 ACTIVATING ENZYME |
AT5G54800 | PredictedAffinity Capture-MS | FSW = 0.0916
| Unknown | GPT1 ANTIPORTER/ GLUCOSE-6-PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT5G64760 | PredictedAffinity Capture-MS | FSW = 0.0236
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT1G19080 | Predictedinterologs mapping | FSW = 0.1832
| Unknown | TTN10 (TITAN 10) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454