Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G80350 - ( ERH3 (ECTOPIC ROOT HAIR 3) ATP binding / nucleoside-triphosphatase/ nucleotide binding )

17 Proteins interacs with AT1G80350
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G10470

Experimental

FSW = 0.0356

Class B:

unclear

plastid

plasma membrane

cytosol

cytoskeleton

cell plate

Class D:

nucleus (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

KINESIN MOTOR PROTEIN-RELATED
AT4G25560

Experimental

FSW = 0.0381

Class B:

unclear

nucleus

cytoskeleton

Class D:

nucleus (p = 0.78)

ATMYB18 (MYB DOMAIN PROTEIN 18) DNA BINDING / TRANSCRIPTION FACTOR
AT1G27400

Predicted

two hybrid

FSW = 0.0296

Unknown

60S RIBOSOMAL PROTEIN L17 (RPL17A)
AT5G27850

Predicted

two hybrid

FSW = 0.0148

Unknown

60S RIBOSOMAL PROTEIN L18 (RPL18C)
AT5G10540

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0889

Unknown

PEPTIDASE M3 FAMILY PROTEIN / THIMET OLIGOPEPTIDASE FAMILY PROTEIN
AT1G04510

Predicted

Gene fusion method

FSW = 0.0435

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G29870

Predicted

two hybrid

FSW = 0.1143

Unknown

TRNA SYNTHETASE CLASS II (G H P AND S) FAMILY PROTEIN
AT5G20030

Predicted

two hybrid

FSW = 0.0462

Unknown

AGENET DOMAIN-CONTAINING PROTEIN
AT1G61210Predicted

two hybrid

two hybrid

FSW = 0.1600

Unknown

WD-40 REPEAT FAMILY PROTEIN / KATANIN P80 SUBUNIT PUTATIVE
AT2G22370

Predicted

two hybrid

FSW = 0.0395

Unknown

UNKNOWN PROTEIN
AT5G23430

Predicted

two hybrid

in vivo

in vitro

FSW = 0.0462

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G48630

Predicted

two hybrid

two hybrid

FSW = 0.0170

Unknown

CYCLIN FAMILY PROTEIN
AT3G15352

Predicted

two hybrid

FSW = 0.0368

Unknown

ATCOX17 COPPER CHAPERONE
AT5G27320

Predicted

in vitro

in vivo

FSW = 0.0471

Unknown

GID1C (GA INSENSITIVE DWARF1C) HYDROLASE
AT1G52640

Predicted

Gene fusion method

FSW = 0.2125

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT5G43920

Predicted

Gene fusion method

FSW = 0.3953

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G15200

Predicted

Gene fusion method

FSW = 0.3106

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454