Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G80350 - ( ERH3 (ECTOPIC ROOT HAIR 3) ATP binding / nucleoside-triphosphatase/ nucleotide binding )
17 Proteins interacs with AT1G80350Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G10470 | Experimental | FSW = 0.0356
| Class B:unclearplastidplasma membranecytosolcytoskeletoncell plateClass D:nucleus (p = 0.78)mitochondrion (p = 0.82)cytosol (p = 0.67) | KINESIN MOTOR PROTEIN-RELATED |
AT4G25560 | Experimental | FSW = 0.0381
| Class B:unclearnucleuscytoskeletonClass D:nucleus (p = 0.78) | ATMYB18 (MYB DOMAIN PROTEIN 18) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G27400 | Predictedtwo hybrid | FSW = 0.0296
| Unknown | 60S RIBOSOMAL PROTEIN L17 (RPL17A) |
AT5G27850 | Predictedtwo hybrid | FSW = 0.0148
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18C) |
AT5G10540 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0889
| Unknown | PEPTIDASE M3 FAMILY PROTEIN / THIMET OLIGOPEPTIDASE FAMILY PROTEIN |
AT1G04510 | PredictedGene fusion method | FSW = 0.0435
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G29870 | Predictedtwo hybrid | FSW = 0.1143
| Unknown | TRNA SYNTHETASE CLASS II (G H P AND S) FAMILY PROTEIN |
AT5G20030 | Predictedtwo hybrid | FSW = 0.0462
| Unknown | AGENET DOMAIN-CONTAINING PROTEIN |
AT1G61210 | Predictedtwo hybridtwo hybrid | FSW = 0.1600
| Unknown | WD-40 REPEAT FAMILY PROTEIN / KATANIN P80 SUBUNIT PUTATIVE |
AT2G22370 | Predictedtwo hybrid | FSW = 0.0395
| Unknown | UNKNOWN PROTEIN |
AT5G23430 | Predictedtwo hybridin vivoin vitro | FSW = 0.0462
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G48630 | Predictedtwo hybridtwo hybrid | FSW = 0.0170
| Unknown | CYCLIN FAMILY PROTEIN |
AT3G15352 | Predictedtwo hybrid | FSW = 0.0368
| Unknown | ATCOX17 COPPER CHAPERONE |
AT5G27320 | Predictedin vitroin vivo | FSW = 0.0471
| Unknown | GID1C (GA INSENSITIVE DWARF1C) HYDROLASE |
AT1G52640 | PredictedGene fusion method | FSW = 0.2125
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT5G43920 | PredictedGene fusion method | FSW = 0.3953
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G15200 | PredictedGene fusion method | FSW = 0.3106
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454