Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G80500 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN transport ER to Golgi vesicle-mediated transport LOCATED IN intracellular EXPRESSED IN 24 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s Sedlin (InterProIPR006722) Longin-like (InterProIPR011012) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT2G209301) Has 437 Blast hits to 435 proteins in 138 species Archae - 0 Bacteria - 0 Metazoa - 248 Fungi - 75 Plants - 53 Viruses - 0 Other Eukaryotes - 61 (source NCBI BLink) )

58 Proteins interacs with AT1G80500
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G13870

Predicted

Phenotypic Enhancement

FSW = 0.0159

Unknown

RHD3 (ROOT HAIR DEFECTIVE 3) GTP BINDING
AT2G17360

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0456

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4A)
AT1G20260

Predicted

Phenotypic Enhancement

FSW = 0.0324

Unknown

HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT1G02130

Predicted

Affinity Capture-Western

FSW = 0.0194

Unknown

ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING
AT1G31780

Predicted

Phenotypic Enhancement

FSW = 0.0873

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT2G45200

Predicted

Phenotypic Enhancement

FSW = 0.0659

Unknown

GOS12 (GOLGI SNARE 12) SNARE BINDING
AT5G26240

Predicted

Phenotypic Enhancement

FSW = 0.0484

Unknown

CLC-D (CHLORIDE CHANNEL D) ANION CHANNEL/ VOLTAGE-GATED CHLORIDE CHANNEL
AT3G48170

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0288

Unknown

ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT5G19830

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0503

Unknown

AMINOACYL-TRNA HYDROLASE
AT5G67630

Predicted

Affinity Capture-MS

FSW = 0.0033

Unknown

DNA HELICASE PUTATIVE
AT3G58610

Predicted

Affinity Capture-MS

FSW = 0.0882

Unknown

KETOL-ACID REDUCTOISOMERASE
AT5G16710

Predicted

two hybrid

FSW = 0.0161

Unknown

DHAR3 (DEHYDROASCORBATE REDUCTASE 1) GLUTATHIONE DEHYDROGENASE (ASCORBATE)
AT1G10070

Predicted

biochemical

FSW = 0.0159

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT5G03650

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0195

Unknown

SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME
AT1G06470

Predicted

Phenotypic Enhancement

FSW = 0.0484

Unknown

PHOSPHATE TRANSLOCATOR-RELATED
AT1G59820

Predicted

Phenotypic Enhancement

FSW = 0.0853

Unknown

ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER
AT4G04340

Predicted

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

Affinity Capture-MS

Co-purification

two hybrid

Reconstituted Complex

interologs mapping

co-fractionation

Co-fractionation

Co-purification

Co-purification

Co-purification

Co-purification

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

two hybrid

biochemical

Co-purification

co-fractionation

Co-fractionation

interologs mapping

Phenotypic Enhancement

Affinity Capture-MS

FSW = 0.1815

Unknown

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT3G49370

Predicted

Phenotypic Enhancement

FSW = 0.0923

Unknown

CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE
AT4G14350

Predicted

Phenotypic Enhancement

FSW = 0.1040

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G07180

Predicted

Phenotypic Enhancement

FSW = 0.0671

Unknown

NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE
AT1G21700

Predicted

Affinity Capture-MS

FSW = 0.0643

Unknown

ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT1G06960

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0429

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT2G36170Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0869

Unknown

UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT3G14270

Predicted

Reconstituted Complex

interologs mapping

FSW = 0.1729

Unknown

PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN
AT5G18280

Predicted

Phenotypic Enhancement

FSW = 0.1844

Unknown

ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) ATPASE/ NUCLEOTIDE DIPHOSPHATASE
AT3G05710

Predicted

Phenotypic Enhancement

FSW = 0.1753

Unknown

SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT5G66020

Predicted

Phenotypic Enhancement

FSW = 0.0581

Unknown

ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT3G13900

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1204

Unknown

ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM
AT5G62480

Predicted

two hybrid

FSW = 0.0159

Unknown

ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9) GLUTATHIONE TRANSFERASE
AT1G19730

Predicted

interologs mapping

FSW = 0.0418

Unknown

ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT1G05180

Predicted

Phenotypic Enhancement

FSW = 0.1107

Unknown

AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME
AT5G58030

Predicted

two hybrid

Affinity Capture-MS

two hybrid

Affinity Capture-MS

two hybrid

Affinity Capture-MS

two hybrid

two hybrid

Co-purification

FSW = 0.1124

Unknown

TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN
AT5G54750

Predicted

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Co-purification

Affinity Capture-MS

two hybrid

interologs mapping

FSW = 0.0619

Unknown

TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE
AT1G09270

Predicted

Affinity Capture-MS

FSW = 0.0113

Unknown

IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER
AT1G09810

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0781

Unknown

ECT11 (EVOLUTIONARILY CONSERVED C-TERMINAL REGION 11)
AT1G57620

Predicted

Phenotypic Enhancement

FSW = 0.0181

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT1G69640

Predicted

Phenotypic Suppression

FSW = 0.0599

Unknown

SBH1 (SPHINGOID BASE HYDROXYLASE 1) CATALYTIC/ SPHINGOSINE HYDROXYLASE
AT1G01230

Predicted

Phenotypic Enhancement

FSW = 0.0484

Unknown

ORMDL FAMILY PROTEIN
AT1G10210

Predicted

biochemical

FSW = 0.0109

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G16560

Predicted

Phenotypic Enhancement

FSW = 0.0443

Unknown

PER1-LIKE FAMILY PROTEIN
AT1G48760

Predicted

Phenotypic Enhancement

FSW = 0.1094

Unknown

DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER
AT1G66240

Predicted

Phenotypic Enhancement

FSW = 0.0482

Unknown

ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING
AT1G75380

Predicted

Phenotypic Enhancement

FSW = 0.1999

Unknown

WOUND-RESPONSIVE PROTEIN-RELATED
AT2G34770

Predicted

Phenotypic Enhancement

FSW = 0.0713

Unknown

FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE
AT3G05000

Predicted

Affinity Capture-MS

Affinity Capture-MS

two hybrid

co-fractionation

Co-fractionation

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.1348

Unknown

TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN
AT3G06460

Predicted

Phenotypic Suppression

FSW = 0.0188

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G12180

Predicted

Phenotypic Enhancement

FSW = 0.1318

Unknown

CORNICHON FAMILY PROTEIN
AT3G50860

Predicted

Phenotypic Enhancement

FSW = 0.0831

Unknown

CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN
AT3G59540Predicted

Phenotypic Suppression

FSW = 0.0255

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT5G01770

Predicted

Reconstituted Complex

Reconstituted Complex

Affinity Capture-Western

Reconstituted Complex

co-fractionation

Co-fractionation

Phenotypic Enhancement

FSW = 0.1084

Unknown

RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT5G13860

Predicted

Phenotypic Enhancement

FSW = 0.0033

Unknown

ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE
AT5G16170

Predicted

Phenotypic Enhancement

FSW = 0.0531

Unknown

UNKNOWN PROTEIN
AT5G27970Predicted

Phenotypic Enhancement

FSW = 0.0665

Unknown

BINDING
AT5G38820

Predicted

Affinity Capture-MS

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Affinity Capture-MS

interologs mapping

FSW = 0.1592

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G52210

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0646

Unknown

ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT2G13680

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0188

Unknown

CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE
AT3G50780

Predicted

Affinity Capture-MS

FSW = 0.0230

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK)
AT5G02280

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0802

Unknown

SYNBINDIN PUTATIVE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454