Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G80500 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN transport ER to Golgi vesicle-mediated transport LOCATED IN intracellular EXPRESSED IN 24 plant structures EXPRESSED DURING 15 growth stages CONTAINS InterPro DOMAIN/s Sedlin (InterProIPR006722) Longin-like (InterProIPR011012) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT2G209301) Has 437 Blast hits to 435 proteins in 138 species Archae - 0 Bacteria - 0 Metazoa - 248 Fungi - 75 Plants - 53 Viruses - 0 Other Eukaryotes - 61 (source NCBI BLink) )
58 Proteins interacs with AT1G80500Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G13870 | PredictedPhenotypic Enhancement | FSW = 0.0159
| Unknown | RHD3 (ROOT HAIR DEFECTIVE 3) GTP BINDING |
AT2G17360 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0456
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT1G20260 | PredictedPhenotypic Enhancement | FSW = 0.0324
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT1G02130 | PredictedAffinity Capture-Western | FSW = 0.0194
| Unknown | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
AT1G31780 | PredictedPhenotypic Enhancement | FSW = 0.0873
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT2G45200 | PredictedPhenotypic Enhancement | FSW = 0.0659
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT5G26240 | PredictedPhenotypic Enhancement | FSW = 0.0484
| Unknown | CLC-D (CHLORIDE CHANNEL D) ANION CHANNEL/ VOLTAGE-GATED CHLORIDE CHANNEL |
AT3G48170 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0288
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT5G19830 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0503
| Unknown | AMINOACYL-TRNA HYDROLASE |
AT5G67630 | PredictedAffinity Capture-MS | FSW = 0.0033
| Unknown | DNA HELICASE PUTATIVE |
AT3G58610 | PredictedAffinity Capture-MS | FSW = 0.0882
| Unknown | KETOL-ACID REDUCTOISOMERASE |
AT5G16710 | Predictedtwo hybrid | FSW = 0.0161
| Unknown | DHAR3 (DEHYDROASCORBATE REDUCTASE 1) GLUTATHIONE DEHYDROGENASE (ASCORBATE) |
AT1G10070 | Predictedbiochemical | FSW = 0.0159
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT5G03650 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0195
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT1G06470 | PredictedPhenotypic Enhancement | FSW = 0.0484
| Unknown | PHOSPHATE TRANSLOCATOR-RELATED |
AT1G59820 | PredictedPhenotypic Enhancement | FSW = 0.0853
| Unknown | ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER |
AT4G04340 | PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-MSinterologs mappingAffinity Capture-MSCo-purificationtwo hybridReconstituted Complexinterologs mappingco-fractionationCo-fractionationCo-purificationCo-purificationCo-purificationCo-purificationReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted ComplexReconstituted Complextwo hybridbiochemicalCo-purificationco-fractionationCo-fractionationinterologs mappingPhenotypic EnhancementAffinity Capture-MS | FSW = 0.1815
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT3G49370 | PredictedPhenotypic Enhancement | FSW = 0.0923
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT4G14350 | PredictedPhenotypic Enhancement | FSW = 0.1040
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G07180 | PredictedPhenotypic Enhancement | FSW = 0.0671
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT1G21700 | PredictedAffinity Capture-MS | FSW = 0.0643
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT1G06960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0429
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT2G36170 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.0869
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT3G14270 | PredictedReconstituted Complexinterologs mapping | FSW = 0.1729
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT5G18280 | PredictedPhenotypic Enhancement | FSW = 0.1844
| Unknown | ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2) ATPASE/ NUCLEOTIDE DIPHOSPHATASE |
AT3G05710 | PredictedPhenotypic Enhancement | FSW = 0.1753
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT5G66020 | PredictedPhenotypic Enhancement | FSW = 0.0581
| Unknown | ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE |
AT3G13900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1204
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT5G62480 | Predictedtwo hybrid | FSW = 0.0159
| Unknown | ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9) GLUTATHIONE TRANSFERASE |
AT1G19730 | Predictedinterologs mapping | FSW = 0.0418
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G05180 | PredictedPhenotypic Enhancement | FSW = 0.1107
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT5G58030 | Predictedtwo hybridAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridAffinity Capture-MStwo hybridtwo hybridCo-purification | FSW = 0.1124
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN |
AT5G54750 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSCo-purificationAffinity Capture-MStwo hybridinterologs mapping | FSW = 0.0619
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 PUTATIVE |
AT1G09270 | PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G09810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0781
| Unknown | ECT11 (EVOLUTIONARILY CONSERVED C-TERMINAL REGION 11) |
AT1G57620 | PredictedPhenotypic Enhancement | FSW = 0.0181
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G69640 | PredictedPhenotypic Suppression | FSW = 0.0599
| Unknown | SBH1 (SPHINGOID BASE HYDROXYLASE 1) CATALYTIC/ SPHINGOSINE HYDROXYLASE |
AT1G01230 | PredictedPhenotypic Enhancement | FSW = 0.0484
| Unknown | ORMDL FAMILY PROTEIN |
AT1G10210 | Predictedbiochemical | FSW = 0.0109
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G16560 | PredictedPhenotypic Enhancement | FSW = 0.0443
| Unknown | PER1-LIKE FAMILY PROTEIN |
AT1G48760 | PredictedPhenotypic Enhancement | FSW = 0.1094
| Unknown | DELTA-ADR (DELTA-ADAPTIN) BINDING / CLATHRIN BINDING / PROTEIN BINDING / PROTEIN TRANSPORTER |
AT1G66240 | PredictedPhenotypic Enhancement | FSW = 0.0482
| Unknown | ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING |
AT1G75380 | PredictedPhenotypic Enhancement | FSW = 0.1999
| Unknown | WOUND-RESPONSIVE PROTEIN-RELATED |
AT2G34770 | PredictedPhenotypic Enhancement | FSW = 0.0713
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT3G05000 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridco-fractionationCo-fractionationAffinity Capture-MSPhenotypic Enhancement | FSW = 0.1348
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN |
AT3G06460 | PredictedPhenotypic Suppression | FSW = 0.0188
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G12180 | PredictedPhenotypic Enhancement | FSW = 0.1318
| Unknown | CORNICHON FAMILY PROTEIN |
AT3G50860 | PredictedPhenotypic Enhancement | FSW = 0.0831
| Unknown | CLATHRIN ADAPTOR COMPLEX SMALL CHAIN FAMILY PROTEIN |
AT3G59540 | PredictedPhenotypic Suppression | FSW = 0.0255
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT5G01770 | PredictedReconstituted ComplexReconstituted ComplexAffinity Capture-WesternReconstituted Complexco-fractionationCo-fractionationPhenotypic Enhancement | FSW = 0.1084
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G13860 | PredictedPhenotypic Enhancement | FSW = 0.0033
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G16170 | PredictedPhenotypic Enhancement | FSW = 0.0531
| Unknown | UNKNOWN PROTEIN |
AT5G27970 | PredictedPhenotypic Enhancement | FSW = 0.0665
| Unknown | BINDING |
AT5G38820 | PredictedAffinity Capture-MSPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementAffinity Capture-MSinterologs mapping | FSW = 0.1592
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G52210 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0646
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
AT2G13680 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0188
| Unknown | CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE |
AT3G50780 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT5G02280 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0802
| Unknown | SYNBINDIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454