Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G80510 - ( amino acid transporter family protein )
44 Proteins interacs with AT1G80510Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G20260 | PredictedPhenotypic Suppression | FSW = 0.0606
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT1G07810 | PredictedPhenotypic Enhancement | FSW = 0.0327
| Unknown | ECA1 (ER-TYPE CA2+-ATPASE 1) CALCIUM-TRANSPORTING ATPASE |
AT3G57990 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0238
| Unknown | UNKNOWN PROTEIN |
AT1G79590 | Predictedtwo hybrid | FSW = 0.0160
| Unknown | SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR |
AT3G30390 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0484
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT3G62870 | PredictedAffinity Capture-MSsynthetic growth defect | FSW = 0.0467
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G74560 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1110
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT5G36790 | PredictedAffinity Capture-MS | FSW = 0.1000
| Unknown | PHOSPHOGLYCOLATE PHOSPHATASE PUTATIVE |
AT5G64270 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.0782
| Unknown | SPLICING FACTOR PUTATIVE |
AT1G10070 | PredictedAffinity Capture-MSReconstituted Complexinterologs mappingPhenotypic Enhancementtwo hybrid | FSW = 0.0509
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT3G23600 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1380
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT5G52640 | PredictedSynthetic Lethality | FSW = 0.0028
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G12350 | PredictedAffinity Capture-MS | FSW = 0.0225
| Unknown | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0636
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT5G37720 | PredictedAffinity Capture-MS | FSW = 0.0142
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT2G40290 | PredictedAffinity Capture-MS | FSW = 0.0512
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT4G25340 | PredictedPhenotypic Suppression | FSW = 0.0304
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT3G14270 | PredictedAffinity Capture-MS | FSW = 0.0807
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.0349
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT1G07780 | PredictedSynthetic Rescue | FSW = 0.2222
| Unknown | PAI1 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 1) PHOSPHORIBOSYLANTHRANILATE ISOMERASE |
AT1G62800 | PredictedPhenotypic Enhancement | FSW = 0.0357
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G10210 | PredictedAffinity Capture-MS | FSW = 0.0772
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G66520 | PredictedAffinity Capture-MS | FSW = 0.0395
| Unknown | PDE194 (PIGMENT DEFECTIVE 194) CATALYTIC/ FORMYLTETRAHYDROFOLATE DEFORMYLASE/ HYDROXYMETHYL- FORMYL- AND RELATED TRANSFERASE |
AT1G75380 | PredictedAffinity Capture-MS | FSW = 0.0568
| Unknown | WOUND-RESPONSIVE PROTEIN-RELATED |
AT1G79820 | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | SGB1 (SUPPRESSOR OF G PROTEIN BETA1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G30800 | PredictedAffinity Capture-MSPhenotypic Enhancement | FSW = 0.0344
| Unknown | HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) ATP BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0270
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G34180 | PredictedAffinity Capture-MS | FSW = 0.0627
| Unknown | CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.0380
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G02510 | PredictedAffinity Capture-Western | FSW = 0.0741
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT3G06470 | PredictedAffinity Capture-MS | FSW = 0.0271
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0561
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G22290 | PredictedSynthetic Lethality | FSW = 0.0650
| Unknown | UNKNOWN PROTEIN |
AT3G60240 | PredictedSynthetic Lethality | FSW = 0.0864
| Unknown | EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) TRANSLATION INITIATION FACTOR |
AT5G19510 | PredictedPhenotypic EnhancementPhenotypic EnhancementSynthetic Lethalitysynthetic growth defectAffinity Capture-MSco-fractionationCo-fractionationPhenotypic EnhancementSynthetic Lethality | FSW = 0.3749
| Unknown | ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2) |
AT5G39400 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1538
| Unknown | PTEN1 PHOSPHATASE |
AT5G66640 | Predictedbiochemical | FSW = 0.0079
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT5G67320 | PredictedAffinity Capture-MS | FSW = 0.0047
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT2G21250 | PredictedPhenotypic Enhancement | FSW = 0.0180
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT5G24510 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1695
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P1 PUTATIVE |
AT5G64760 | Predictedinterologs mapping | FSW = 0.0686
| Unknown | RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) |
AT2G37550 | Predictedtwo hybrid | FSW = 0.0059
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT5G38820 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0952
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454