Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G80670 - ( transducin family protein / WD-40 repeat family protein )
22 Proteins interacs with AT1G80670Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G05420 | Experimentaltwo hybrid | FSW = 0.0229
| Unknown | DDB1A (DAMAGED DNA BINDING PROTEIN 1A) DNA BINDING / PROTEIN BINDING |
AT3G45770 | Predictedinteraction prediction | FSW = 0.0131
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT1G67120 | PredictedAffinity Capture-MS | FSW = 0.0168
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR BINDING |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0050
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G13120 | Predictedsynthetic growth defectinteraction prediction | FSW = 0.3111
| Unknown | EMB1745 (EMBRYO DEFECTIVE 1745) |
AT3G06720 | Predictedtwo hybridinteraction prediction | FSW = 0.0612
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT5G13430 | Predictedtwo hybrid | FSW = 0.0832
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT MITOCHONDRIAL PUTATIVE / RIESKE IRON-SULFUR PROTEIN PUTATIVE |
AT5G13440 | Predictedinteraction prediction | FSW = 0.0664
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT MITOCHONDRIAL PUTATIVE / RIESKE IRON-SULFUR PROTEIN PUTATIVE |
AT1G55860 | Predictedsynthetic growth defect | FSW = 0.0407
| Unknown | UPL1 (UBIQUITIN-PROTEIN LIGASE 1) UBIQUITIN-PROTEIN LIGASE |
AT1G10390 | PredictedSynthetic Lethalityin vivoin vitroSynthetic LethalityCo-expression | FSW = 0.2178
| Unknown | NUCLEOPORIN FAMILY PROTEIN |
AT1G59660 | PredictedSynthetic LethalitySynthetic Lethalityinteraction prediction | FSW = 0.2753
| Unknown | NUCLEOPORIN FAMILY PROTEIN |
AT3G54380 | PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.0497
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.0233
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT1G22760 | Predictedinterologs mapping | FSW = 0.0210
| Unknown | PAB3 (POLY(A) BINDING PROTEIN 3) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT5G11200 | PredictedReconstituted Complex | FSW = 0.0364
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G02690 | Predictedtwo hybridCo-expression | FSW = 0.0404
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
AT2G47020 | Predictedtwo hybridinteraction prediction | FSW = 0.0337
| Unknown | PEPTIDE CHAIN RELEASE FACTOR PUTATIVE |
AT3G19590 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1580
| Unknown | WD-40 REPEAT FAMILY PROTEIN / MITOTIC CHECKPOINT PROTEIN PUTATIVE |
AT1G49910 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1214
| Unknown | WD-40 REPEAT FAMILY PROTEIN / MITOTIC CHECKPOINT PROTEIN PUTATIVE |
AT1G69400 | PredictedPhylogenetic profile method | FSW = 0.1078
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G17670 | PredictedGene fusion method | FSW = 0.1538
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT4G06634 | PredictedGene fusion method | FSW = 0.0965
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454