Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT1G80930 - ( MIF4G domain-containing protein / MA3 domain-containing protein )
20 Proteins interacs with AT1G80930Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G25780 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B-2) NUCLEIC ACID BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
AT1G20960 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2688
| Unknown | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT1G09770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2841
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G64270 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1609
| Unknown | SPLICING FACTOR PUTATIVE |
AT1G80070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2154
| Unknown | SUS2 (ABNORMAL SUSPENSOR 2) |
AT2G33340 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1659
| Unknown | NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G04390 | PredictedSynthetic Lethality | FSW = 0.0492
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17A) |
AT5G02620 | Predictedtwo hybrid | FSW = 0.0258
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT4G25630 | PredictedSynthetic Lethality | FSW = 0.0140
| Unknown | FIB2 (FIBRILLARIN 2) SNORNA BINDING |
AT1G04510 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.2055
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G15900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2033
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G10580 | PredictedAffinity Capture-MS | FSW = 0.3009
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G17130 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2608
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT3G27000 | PredictedSynthetic Lethality | FSW = 0.0064
| Unknown | ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G15770 | PredictedSynthetic Lethality | FSW = 0.0087
| Unknown | RNA BINDING / PROTEIN BINDING |
AT5G28740 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5208
| Unknown | TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED |
AT3G55220 | PredictedAffinity Capture-MS | FSW = 0.2048
| Unknown | SPLICING FACTOR PUTATIVE |
AT5G41770 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2409
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT3G13210 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2017
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
AT3G16650 | PredictedAffinity Capture-MS | FSW = 0.2909
| Unknown | PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454