Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G01070 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN endomembrane system integral to membrane EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Transmembrane receptor eukaryota (InterProIPR009637) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT1G724801) Has 500 Blast hits to 499 proteins in 125 species Archae - 0 Bacteria - 0 Metazoa - 271 Fungi - 99 Plants - 97 Viruses - 0 Other Eukaryotes - 33 (source NCBI BLink) )

22 Proteins interacs with AT2G01070
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G36750

Predicted

Reconstituted Complex

Affinity Capture-Western

Co-purification

FSW = 0.2090

Unknown

QUINONE REDUCTASE FAMILY PROTEIN
AT1G14010

Predicted

interologs mapping

FSW = 0.0108

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT3G30390

Predicted

interologs mapping

FSW = 0.0878

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G26030

Predicted

Affinity Capture-MS

FSW = 0.0105

Unknown

FC1 (FERROCHELATASE 1) FERROCHELATASE
AT3G47370

Predicted

interologs mapping

FSW = 0.0282

Unknown

40S RIBOSOMAL PROTEIN S20 (RPS20B)
AT4G18100

Predicted

two hybrid

FSW = 0.0395

Unknown

60S RIBOSOMAL PROTEIN L32 (RPL32A)
AT3G13445

Predicted

Affinity Capture-Western

Affinity Capture-Western

Co-purification

FSW = 0.0424

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT2G40290

Predicted

interologs mapping

FSW = 0.0103

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE
AT4G33730

Predicted

interologs mapping

FSW = 0.1250

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT1G01020

Predicted

Affinity Capture-Western

Co-purification

FSW = 0.1443

Unknown

ARV1
AT3G16220

Predicted

two hybrid

FSW = 0.0334

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN REGULATION OF TRANSCRIPTION LOCATED IN CYTOPLASM EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PREDICTED EUKARYOTIC LIGT (INTERPROIPR009210) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RNA BINDING / CATALYTIC (TAIRAT3G162301) HAS 197 BLAST HITS TO 196 PROTEINS IN 65 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 146 FUNGI - 9 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 24 (SOURCE NCBI BLINK)
AT1G07340

Predicted

Affinity Capture-Western

FSW = 0.0687

Unknown

ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G08260

Predicted

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

Affinity Capture-Western

Co-purification

co-fractionation

Co-fractionation

interologs mapping

FSW = 0.1409

Unknown

TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G18550

Predicted

interologs mapping

FSW = 0.0320

Unknown

ATP BINDING / MICROTUBULE MOTOR
AT1G43080

Predicted

interologs mapping

FSW = 0.0447

Unknown

GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN
AT1G49520

Predicted

Co-purification

FSW = 0.0411

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT3G59290

Predicted

interologs mapping

interologs mapping

interologs mapping

interologs mapping

biochemical

interologs mapping

Phenotypic Enhancement

FSW = 0.1296

Unknown

EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT4G14000

Predicted

Affinity Capture-MS

FSW = 0.0110

Unknown

UNKNOWN PROTEIN
AT5G11570

Predicted

Reconstituted Complex

Reconstituted Complex

Reconstituted Complex

Co-purification

FSW = 0.3491

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT2G19160

Predicted

Affinity Capture-Western

FSW = 0.1077

Unknown

UNKNOWN PROTEIN
AT3G17520

Predicted

Affinity Capture-Western

FSW = 0.2173

Unknown

LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN
AT4G24040

Predicted

Reconstituted Complex

FSW = 0.1776

Unknown

TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454