Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G01120 - ( ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4) protein binding )
22 Proteins interacs with AT2G01120Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G19330 | Experimentalin vitro | FSW = 0.0814
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
AT1G26840 | Experimentalcoimmunoprecipitation | FSW = 0.3111
| Unknown | ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6) DNA BINDING |
AT2G37560 | Experimentalcoimmunoprecipitation | FSW = 0.2616
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT5G13060 | ExperimentalReconstituted Complex | FSW = 0.1460
| Unknown | ABAP1 (ARMADILLO BTB ARABIDOPSIS PROTEIN 1) PROTEIN BINDING |
AT5G16690 | Experimentalcoimmunoprecipitation | FSW = 0.5095
| Unknown | ORC3 (ORIGIN RECOGNITION COMPLEX SUBUNIT 3) PROTEIN BINDING |
AT4G14700 | Experimentalcoimmunoprecipitation | FSW = 0.4083
| Unknown | ORC1A (ORIGIN RECOGNITION COMPLEX 1) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING |
AT4G29910 | Experimentalcoimmunoprecipitation | FSW = 0.2439
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT5G13300 | Predictedtwo hybrid | FSW = 0.0658
| Unknown | SFC (SCARFACE) ARF GTPASE ACTIVATOR/ PHOSPHOINOSITIDE BINDING |
AT1G21630 | Predictedtwo hybrid | FSW = 0.0291
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT2G24490 | Predictedtwo hybrid | FSW = 0.1177
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT3G02920 | Predictedtwo hybrid | FSW = 0.3559
| Unknown | REPLICATION PROTEIN-RELATED |
AT1G44900 | Predictedtwo hybridAffinity Capture-MSCo-expression | FSW = 0.2837
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT4G02060 | PredictedAffinity Capture-MSCo-expression | FSW = 0.3029
| Unknown | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G47630 | Predictedtwo hybrid | FSW = 0.0062
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT5G08380 | Predictedtwo hybrid | FSW = 0.0462
| Unknown | ATAGAL1 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 1) ALPHA-GALACTOSIDASE/ CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G20850 | Predictedtwo hybrid | FSW = 0.0118
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT5G45190 | Predictedtwo hybrid | FSW = 0.0776
| Unknown | CYCLIN FAMILY PROTEIN |
AT2G16440 | Predictedtwo hybrid | FSW = 0.5045
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT4G12620 | Predictedin vivoAffinity Capture-MStwo hybrid | FSW = 0.3027
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT5G44635 | Predictedtwo hybrid | FSW = 0.1633
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT5G46280 | Predictedtwo hybridAffinity Capture-MSCo-expression | FSW = 0.1987
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT2G20980 | PredictedAffinity Capture-MS | FSW = 0.3266
| Unknown | MCM10 |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454