Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G01570 - ( RGA1 (REPRESSOR OF GA1-3 1) protein binding / transcription factor )

10 Proteins interacs with AT2G01570
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G09530

Experimental

Reconstituted Complex

two hybrid

in vitro

FSW = 0.0863

Class A:

nucleus

Class D:

nucleus (p = 0.78)

PIF3 (PHYTOCHROME INTERACTING FACTOR 3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT2G20180

Experimental

two hybrid

FSW = 0.0937

Class A:

nucleus

Class D:

nucleus (p = 0.78)

PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5) DNA BINDING / PHYTOCHROME BINDING / TRANSCRIPTION FACTOR
AT2G43010

Experimental

Reconstituted Complex

Affinity Capture-Western

two hybrid

in vitro

affinity technology

FSW = 0.1233

Class D:

nucleus (p = 0.78)

PIF4 (PHYTOCHROME INTERACTING FACTOR 4) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT4G24210

Experimental

pull down

two hybrid

Reconstituted Complex

pull down

3 hybrid method

two hybrid

Reconstituted Complex

FSW = 0.3472

Unknown

SLY1 (SLEEPY1)
AT3G63010

Experimental

two hybrid

pull down

two hybrid

Affinity Capture-Western

affinity technology

two hybrid

FSW = 0.3036

Unknown

GID1B (GA INSENSITIVE DWARF1B) HYDROLASE
AT5G42950

Experimental

FSW = 0.0800

Unknown

GYF DOMAIN-CONTAINING PROTEIN
AT3G05120

Experimental

two hybrid

pull down

two hybrid

Reconstituted Complex

in vitro

FSW = 0.2177

Unknown

GID1A (GA INSENSITIVE DWARF1A) HYDROLASE
AT5G27320

Experimental

two hybrid

pull down

two hybrid

FSW = 0.2246

Unknown

GID1C (GA INSENSITIVE DWARF1C) HYDROLASE
AT4G36930

Experimental

two hybrid

FSW = 0.1131

Unknown

SPT (SPATULA) DNA BINDING / TRANSCRIPTION FACTOR
AT3G62090

Experimental

two hybrid

FSW = 0.1262

Unknown

PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2) PROTEIN BINDING / TRANSCRIPTION FACTOR

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454