Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G01680 - ( ankyrin repeat family protein )

18 Proteins interacs with AT2G01680
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G02620

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1389

Class C:

plasma membrane

ANKYRIN REPEAT FAMILY PROTEIN
AT3G12360

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1667

Class C:

plasma membrane

ITN1 (INCREASED TOLERANCE TO NACL) PROTEIN BINDING
AT5G62890

Predicted

Gene fusion method

FSW = 0.0693

Unknown

PERMEASE PUTATIVE
AT1G18070

Predicted

Gene fusion method

FSW = 0.0334

Unknown

EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE
AT3G06720

Predicted

Gene fusion method

FSW = 0.0059

Unknown

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT5G60070

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2451

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT3G26100

Predicted

Gene fusion method

Co-expression

FSW = 0.4926

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN
AT3G09550

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1894

Unknown

PROTEIN BINDING
AT5G24910

Predicted

Gene fusion method

FSW = 0.2727

Unknown

CYP714A1 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING
AT4G29140

Predicted

Gene fusion method

FSW = 0.0246

Unknown

MATE EFFLUX PROTEIN-RELATED
AT5G15010

Predicted

Gene fusion method

FSW = 0.4431

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT4G38880

Predicted

Gene fusion method

FSW = 0.1364

Unknown

ATASE3 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 3) AMIDOPHOSPHORIBOSYLTRANSFERASE
AT5G66500

Predicted

Gene fusion method

FSW = 0.4167

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT4G26870

Predicted

Gene fusion method

FSW = 0.1391

Unknown

ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE
AT4G34610

Predicted

Gene fusion method

FSW = 0.0508

Unknown

BLH6 (BELL1-LIKE HOMEODOMAIN 6) DNA BINDING / TRANSCRIPTION FACTOR
AT1G76430

Predicted

Gene fusion method

FSW = 0.0933

Unknown

PHOSPHATE TRANSPORTER FAMILY PROTEIN
AT4G02820

Predicted

Gene fusion method

FSW = 0.3788

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT4G19670

Predicted

Gene fusion method

FSW = 0.1905

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454