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AT2G01720 - ( ribophorin I family protein )

26 Proteins interacs with AT2G01720

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G66680	Predicted Co-purification Affinity Capture-MS two hybrid Affinity Capture-Western two hybrid Affinity Capture-Western two hybrid Affinity Capture-MS Co-purification interaction prediction Co-expression	FSW = 0.3114	Class C: vacuole plasma membrane extracellular endoplasmic reticulum	DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE
AT4G01320	Predicted Phenotypic Enhancement	FSW = 0.0926	Class C: vacuole endoplasmic reticulum	ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE
AT2G45200	Predicted Phenotypic Enhancement	FSW = 0.0850	Class C: vacuole	GOS12 (GOLGI SNARE 12) SNARE BINDING
AT2G30710	Predicted Phenotypic Enhancement	FSW = 0.0962	Class C: vacuole	RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT5G63840	Predicted Phenotypic Enhancement	FSW = 0.0909	Class C: plastid endoplasmic reticulum	RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT5G19690	Predicted Co-purification Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.3476	Class C: plasma membrane endoplasmic reticulum	STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A) OLIGOSACCHARYL TRANSFERASE
AT1G34130	Predicted interaction prediction Co-expression	FSW = 0.2797	Class C: plasma membrane endoplasmic reticulum	STT3B (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE B) OLIGOSACCHARYL TRANSFERASE
AT3G55360	Predicted two hybrid interaction prediction	FSW = 0.0390	Class C: plasma membrane endoplasmic reticulum	CER10 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE/ FATTY ACID ELONGASE/ TRANS-2-ENOYL-COA REDUCTASE (NADPH)
AT2G17520	Predicted Phenotypic Enhancement	FSW = 0.1657	Class C: endoplasmic reticulum	IRE1A ENDORIBONUCLEASE/ KINASE
AT2G39630	Predicted Synthetic Lethality interaction prediction	FSW = 0.1915	Class C: endoplasmic reticulum	GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN
AT1G32210	Predicted Affinity Capture-Western Co-purification interaction prediction Co-expression	FSW = 0.2882	Class C: endoplasmic reticulum	ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1)
AT2G38960	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0237	Class C: endoplasmic reticulum	AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT5G26240	Predicted Phenotypic Enhancement	FSW = 0.0600	Unknown	CLC-D (CHLORIDE CHANNEL D) ANION CHANNEL/ VOLTAGE-GATED CHLORIDE CHANNEL
AT2G44660	Predicted Phenotypic Enhancement	FSW = 0.1517	Unknown	TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS
AT4G39220	Predicted Phenotypic Enhancement	FSW = 0.1696	Unknown	ATRER1A
AT5G38460	Predicted Phenotypic Enhancement	FSW = 0.2090	Unknown	ALG6 ALG8 GLYCOSYLTRANSFERASE FAMILY PROTEIN
AT5G38470	Predicted Affinity Capture-MS in vivo in vitro	FSW = 0.0059	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT2G17200	Predicted in vivo in vitro	FSW = 0.0571	Unknown	UBIQUITIN FAMILY PROTEIN
AT1G16900	Predicted Phenotypic Enhancement	FSW = 0.1147	Unknown	SUGAR BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT1G78720	Predicted two hybrid	FSW = 0.1408	Unknown	PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE
AT2G22530	Predicted Phenotypic Enhancement	FSW = 0.2421	Unknown	CATALYTIC/ TRANSFERASE
AT2G34980	Predicted two hybrid interaction prediction	FSW = 0.0391	Unknown	SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE
AT4G24920	Predicted two hybrid	FSW = 0.1147	Unknown	PROTEIN TRANSPORT PROTEIN SEC61 GAMMA SUBUNIT PUTATIVE
AT2G46280	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0080	Unknown	TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G47760	Predicted Phenotypic Enhancement	FSW = 0.0988	Unknown	ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC
AT3G01340	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0607	Unknown	PROTEIN TRANSPORT PROTEIN SEC13 FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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AT2G01720 - ( ribophorin I family protein )

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Class C:

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Downloads

Fasta sequences:

Quick help

FSW

C3

PEP

How to cite