Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G01770 - ( VIT1 (vacuolar iron transporter 1) iron ion transmembrane transporter )
56 Proteins interacs with AT2G01770Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.2541
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT5G24780 | PredictedAffinity Capture-MS | FSW = 0.5147
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT3G26590 | Predictedbiochemical | FSW = 0.0187
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT2G29990 | PredictedAffinity Capture-MS | FSW = 0.5281
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4677
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT5G06290 | Predictedbiochemical | FSW = 0.0166
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT4G23430 | PredictedAffinity Capture-MS | FSW = 0.5195
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT3G47370 | Predictedbiochemical | FSW = 0.0190
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20B) |
AT1G75840 | PredictedAffinity Capture-MS | FSW = 0.4022
| Unknown | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
AT1G27970 | PredictedAffinity Capture-MS | FSW = 0.2913
| Unknown | NTF2B (NUCLEAR TRANSPORT FACTOR 2B) RAN GTPASE BINDING / PROTEIN TRANSPORTER |
AT3G48930 | Predictedbiochemical | FSW = 0.0202
| Unknown | EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G33370 | Predictedinterologs mapping | FSW = 0.0055
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23B) |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5533
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT1G07670 | Predictedinterologs mappingSynthetic Rescue | FSW = 0.0061
| Unknown | CALCIUM-TRANSPORTING ATPASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0068
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G62300 | PredictedAffinity Capture-MS | FSW = 0.2411
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT4G22120 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5022
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT4G29390 | PredictedAffinity Capture-MS | FSW = 0.0578
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30B) |
AT1G07030 | Predictedinterologs mapping | FSW = 0.0525
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT3G10920 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4374
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT2G14580 | PredictedSynthetic Lethality | FSW = 0.0499
| Unknown | ATPRB1 |
AT5G57625 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5351
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MS | FSW = 0.3751
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G10130 | Predictedinterologs mapping | FSW = 0.0065
| Unknown | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
AT2G38960 | Predictedbiochemical | FSW = 0.0121
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT3G08730 | PredictedAffinity Capture-MS | FSW = 0.2816
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3833
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT1G24706 | PredictedAffinity Capture-MS | FSW = 0.3553
| Unknown | UNKNOWN PROTEIN |
AT1G58520 | PredictedAffinity Capture-MS | FSW = 0.6127
| Unknown | HYDROLASE ACTING ON ESTER BONDS / LIPASE |
AT1G34580 | Predictedbiochemical | FSW = 0.0994
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G70290 | Predictedbiochemical | FSW = 0.0230
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G78290 | PredictedAffinity Capture-MS | FSW = 0.4721
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.1459
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.4476
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT2G45080 | PredictedAffinity Capture-MS | FSW = 0.4006
| Unknown | CYCP31 (CYCLIN P31) CYCLIN-DEPENDENT PROTEIN KINASE |
AT2G47570 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3804
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G11900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5774
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.3961
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G49880 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5891
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G51880 | PredictedAffinity Capture-MS | FSW = 0.5903
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3960
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G03240 | Predictedinterologs mapping | FSW = 0.0375
| Unknown | FH (FRATAXIN HOMOLOG) |
AT4G14240 | Predictedbiochemical | FSW = 0.0352
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT4G19645 | PredictedAffinity Capture-MS | FSW = 0.4380
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G25950 | Predictedbiochemical | FSW = 0.0086
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G35620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4587
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4660
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT5G20060 | PredictedAffinity Capture-MS | FSW = 0.5393
| Unknown | PHOSPHOLIPASE/CARBOXYLESTERASE FAMILY PROTEIN |
AT5G27640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5789
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.4803
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G34250 | PredictedAffinity Capture-MS | FSW = 0.4017
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.5319
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.2782
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G53730 | PredictedAffinity Capture-MS | FSW = 0.5630
| Unknown | HISTONE H4 |
AT5G17000 | PredictedAffinity Capture-MS | FSW = 0.2650
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.2201
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454