Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G02020 - ( proton-dependent oligopeptide transport (POT) family protein )

25 Proteins interacs with AT2G02020
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G52190

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9600

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT2G02040

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9216

Unknown

PTR2 (PEPTIDE TRANSPORTER 2) DIPEPTIDE TRANSPORTER/ HIGH AFFINITY OLIGOPEPTIDE TRANSPORTER/ NITRATE TRANSMEMBRANE TRANSPORTER/ PEPTIDE TRANSPORTER/ TRANSPORTER/ TRIPEPTIDE TRANSPORTER
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0080

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G33440

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9612

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT4G21680

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4263

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT3G54140

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9216

Unknown

PTR1 (PEPTIDE TRANSPORTER 1) DIPEPTIDE TRANSPORTER/ TRANSPORTER/ TRIPEPTIDE TRANSPORTER
AT3G53960

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6878

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT1G59740

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7427

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT1G12110

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.7554

Unknown

NRT11 NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT3G16180

Predicted

Phylogenetic profile method

FSW = 0.8084

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT4G25780

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

two hybrid

FSW = 0.0226

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT1G27040

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3413

Unknown

NITRATE TRANSPORTER PUTATIVE
AT5G19640

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9600

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT5G46050

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9600

Unknown

PTR3 (PEPTIDE TRANSPORTER 3) DIPEPTIDE TRANSPORTER/ TRANSPORTER/ TRIPEPTIDE TRANSPORTER
AT2G26690

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9600

Unknown

NITRATE TRANSPORTER (NTP2)
AT5G01180

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9035

Unknown

PTR5 (PEPTIDE TRANSPORTER 5) DIPEPTIDE TRANSPORTER/ TRANSPORTER
AT5G46040

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9404

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT1G22540

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9216

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT2G37900Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9600

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT1G68570

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9804

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT1G32450

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9600

Unknown

NRT15 (NITRATE TRANSPORTER 15) NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT2G40460

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.9035

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT5G13400

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6982

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT1G62200

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.8862

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT1G18880

Predicted

Phylogenetic profile method

FSW = 0.9404

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454