Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G02760 - ( ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) ubiquitin-protein ligase )

150 Proteins interacs with AT2G02760
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G44950

Experimental

two hybrid

FSW = 0.4509

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G55250

Experimental

FSW = 0.0413

Unknown

HUB2 (HISTONE MONO-UBIQUITINATION 2) PROTEIN BINDING / ZINC ION BINDING
AT1G55255Experimental

two hybrid

FSW = 0.2126

Unknown

HUB2 (HISTONE MONO-UBIQUITINATION 2) PROTEIN BINDING / ZINC ION BINDING
AT1G76030

Predicted

synthetic growth defect

FSW = 0.0270

Unknown

VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT
AT4G02620

Predicted

synthetic growth defect

FSW = 0.0614

Unknown

VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN
AT1G12840

Predicted

synthetic growth defect

FSW = 0.0267

Unknown

DET3 (DE-ETIOLATED 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G58730

Predicted

synthetic growth defect

FSW = 0.0431

Unknown

VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD)
AT5G45130

Predicted

Phenotypic Enhancement

FSW = 0.0590

Unknown

RHA1 (RAB HOMOLOG 1) GTP BINDING
AT1G36340

Predicted

Phylogenetic profile method

FSW = 0.1496

Unknown

UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT5G55400

Predicted

Synthetic Lethality

FSW = 0.0326

Unknown

FIMBRIN-LIKE PROTEIN PUTATIVE
AT2G38020

Predicted

synthetic growth defect

FSW = 0.0675

Unknown

VCL1 (VACUOLELESS 1)
AT3G22110

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0676

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G14800

Predicted

Affinity Capture-Western

FSW = 0.0441

Unknown

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G38495

Predicted

Synthetic Lethality

FSW = 0.0417

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YL1 NUCLEAR C-TERMINAL (INTERPROIPR013272) HAS 189 BLAST HITS TO 189 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 80 FUNGI - 83 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 9 (SOURCE NCBI BLINK)
AT3G19980

Predicted

Synthetic Lethality

FSW = 0.0283

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G11870

Predicted

synthetic growth defect

FSW = 0.0167

Unknown

SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE
AT5G56940

Predicted

synthetic growth defect

FSW = 0.0070

Unknown

RIBOSOMAL PROTEIN S16 FAMILY PROTEIN
AT5G16630

Predicted

Phenotypic Enhancement

FSW = 0.0570

Unknown

RAD4 DAMAGED DNA BINDING
AT2G28190

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.2634

Unknown

CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT3G11630

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.1295

Unknown

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT4G01310

Predicted

synthetic growth defect

FSW = 0.0213

Unknown

RIBOSOMAL PROTEIN L5 FAMILY PROTEIN
AT2G41670

Predicted

Synthetic Lethality

FSW = 0.0146

Unknown

GTP-BINDING FAMILY PROTEIN
AT4G01690

Predicted

Synthetic Lethality

FSW = 0.1472

Unknown

PPOX PROTOPORPHYRINOGEN OXIDASE
AT1G12520

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2555

Unknown

ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT5G63110

Predicted

Synthetic Rescue

synthetic growth defect

FSW = 0.2023

Unknown

HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT4G35800

Predicted

Affinity Capture-Western

FSW = 0.0836

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
ATCG00790Predicted

synthetic growth defect

FSW = 0.0106

Unknown

CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT
ATCG00830Predicted

synthetic growth defect

FSW = 0.0105

Unknown

ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
AT3G48750

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0287

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G23630

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.0655

Unknown

ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT1G11890

Predicted

Phenotypic Enhancement

FSW = 0.1497

Unknown

SEC22 TRANSPORTER
AT2G30110

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0213

Unknown

ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE
AT1G64230

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.1559

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT5G19990

Predicted

Synthetic Lethality

FSW = 0.0332

Unknown

RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT2G30260

Predicted

synthetic growth defect

FSW = 0.0350

Unknown

U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G67270

Predicted

synthetic growth defect

FSW = 0.2460

Unknown

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT5G41580

Predicted

Synthetic Rescue

FSW = 0.0474

Unknown

ZINC ION BINDING
AT3G12810

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

synthetic growth defect

FSW = 0.2027

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G75230

Predicted

Phenotypic Enhancement

FSW = 0.0460

Unknown

HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN
AT3G16980

Predicted

Synthetic Lethality

FSW = 0.0661

Unknown

NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT5G64630

Predicted

Phenotypic Enhancement

FSW = 0.1236

Unknown

FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G03190

Predicted

Phenotypic Enhancement

FSW = 0.1311

Unknown

UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT2G35670

Predicted

Synthetic Lethality

FSW = 0.1465

Unknown

FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR
AT1G07370

Predicted

Synthetic Rescue

Synthetic Rescue

Phenotypic Enhancement

FSW = 0.2728

Unknown

PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT2G36740

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2016

Unknown

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT3G19210

Predicted

synthetic growth defect

FSW = 0.2538

Unknown

ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G37470

Predicted

biochemical

FSW = 0.0218

Unknown

HISTONE H2B PUTATIVE
AT2G38560

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1952

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT1G07470

Predicted

interaction prediction

FSW = 0.0109

Unknown

TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE
AT1G01040

Predicted

Phenotypic Enhancement

Synthetic Rescue

FSW = 0.0345

Unknown

DCL1 (DICER-LIKE 1) ATP-DEPENDENT HELICASE/ DOUBLE-STRANDED RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III
AT2G04540

Predicted

synthetic growth defect

FSW = 0.0143

Unknown

3-OXOACYL-(ACYL-CARRIER-PROTEIN) SYNTHASE II PUTATIVE
AT2G46320

Predicted

Synthetic Lethality

FSW = 0.0143

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT3G17465

Predicted

synthetic growth defect

FSW = 0.0207

Unknown

RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G71270

Predicted

synthetic growth defect

FSW = 0.0355

Unknown

POK (POKY POLLEN TUBE)
AT5G66020

Predicted

synthetic growth defect

FSW = 0.0843

Unknown

ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT5G41150

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.0965

Unknown

UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT1G13060

Predicted

Co-purification

FSW = 0.0498

Unknown

PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G31970

Predicted

synthetic growth defect

FSW = 0.2578

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G57450

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.2031

Unknown

XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT5G66130

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1340

Unknown

ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT5G19910

Predicted

synthetic growth defect

FSW = 0.2233

Unknown

SOH1 FAMILY PROTEIN
AT3G28030

Predicted

Phenotypic Enhancement

FSW = 0.0695

Unknown

UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING
AT5G54260

Predicted

synthetic growth defect

FSW = 0.2616

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G38470

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

synthetic growth defect

FSW = 0.0908

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G20850

Predicted

Phenotypic Enhancement

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1890

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT3G54860

Predicted

synthetic growth defect

FSW = 0.1179

Unknown

VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE
AT1G04020

Predicted

Affinity Capture-MS

Affinity Capture-MS

two hybrid

far western blotting

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

two hybrid

Affinity Capture-Western

Reconstituted Complex

Phenotypic Enhancement

FSW = 0.3993

Unknown

BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G04730Predicted

synthetic growth defect

FSW = 0.2463

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G12470

Predicted

synthetic growth defect

FSW = 0.1004

Unknown

PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN
AT1G24290

Predicted

synthetic growth defect

Synthetic Lethality

FSW = 0.0932

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G34150

Predicted

Phenotypic Suppression

FSW = 0.1249

Unknown

TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G49540

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1638

Unknown

NUCLEOTIDE BINDING
AT1G51710

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2066

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G52740

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

FSW = 0.2249

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G59890

Predicted

synthetic growth defect

FSW = 0.2448

Unknown

SNL5 (SIN3-LIKE 5)
AT1G60430

Predicted

Synthetic Lethality

FSW = 0.0519

Unknown

ARPC3 (ACTIN-RELATED PROTEIN C3) STRUCTURAL MOLECULE
AT1G63660

Predicted

Synthetic Lethality

FSW = 0.0038

Unknown

GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE
AT1G66740

Predicted

synthetic growth defect

FSW = 0.2763

Unknown

SGA2
AT1G67190

Predicted

Synthetic Lethality

FSW = 0.2633

Unknown

F-BOX FAMILY PROTEIN
AT1G67500

Predicted

Synthetic Rescue

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1111

Unknown

ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT1G79730

Predicted

Affinity Capture-Western

FSW = 0.1814

Unknown

ELF7 (EARLY FLOWERING 7)
AT1G08840Predicted

synthetic growth defect

FSW = 0.1369

Unknown

EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING
AT1G21710

Predicted

Phenotypic Enhancement

FSW = 0.0414

Unknown

OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1) OXIDIZED PURINE BASE LESION DNA N-GLYCOSYLASE
AT1G54140

Predicted

Synthetic Lethality

FSW = 0.1418

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G54390

Predicted

Synthetic Lethality

FSW = 0.0860

Unknown

PHD FINGER PROTEIN-RELATED
AT1G55915

Predicted

Phenotypic Enhancement

FSW = 0.0698

Unknown

ZINC ION BINDING
AT2G06040

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0306

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK)
AT2G23070

Predicted

Phenotypic Suppression

FSW = 0.0294

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G44580

Predicted

synthetic growth defect

FSW = 0.2757

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT2G45700

Predicted

Phenotypic Enhancement

FSW = 0.0483

Unknown

STERILE ALPHA MOTIF (SAM) DOMAIN-CONTAINING PROTEIN
AT3G02820

Predicted

synthetic growth defect

FSW = 0.2016

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G18860

Predicted

synthetic growth defect

FSW = 0.2036

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G24010

Predicted

Synthetic Rescue

FSW = 0.0121

Unknown

ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G42660

Predicted

Synthetic Lethality

FSW = 0.3108

Unknown

NUCLEOTIDE BINDING
AT3G45630

Predicted

synthetic growth defect

FSW = 0.0331

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G58560

Predicted

Synthetic Lethality

FSW = 0.1819

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G25120Predicted

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

synthetic growth defect

Synthetic Rescue

FSW = 0.2811

Unknown

ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT4G30870

Predicted

synthetic growth defect

FSW = 0.1108

Unknown

MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT4G38630

Predicted

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.1845

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G09740

Predicted

Synthetic Lethality

FSW = 0.1630

Unknown

HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10260

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.1531

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10270

Predicted

Synthetic Lethality

synthetic growth defect

Synthetic Lethality

FSW = 0.2172

Unknown

CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G10390Predicted

Phenotypic Suppression

FSW = 0.1017

Unknown

HISTONE H3
AT5G10960

Predicted

Synthetic Lethality

FSW = 0.2215

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G13780

Predicted

synthetic growth defect

FSW = 0.2821

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G26680

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.2670

Unknown

ENDONUCLEASE PUTATIVE
AT5G42000

Predicted

Phenotypic Enhancement

FSW = 0.0800

Unknown

ORMDL FAMILY PROTEIN
AT5G49510

Predicted

Phenotypic Suppression

FSW = 0.1409

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT2G44150

Predicted

Synthetic Lethality

FSW = 0.1401

Unknown

ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT3G01090

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.0577

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G06460

Predicted

synthetic growth defect

FSW = 0.0146

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G09560

Predicted

Synthetic Lethality

FSW = 0.0633

Unknown

LIPIN FAMILY PROTEIN
AT3G11450

Predicted

Synthetic Lethality

FSW = 0.0103

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED
AT3G20630

Predicted

synthetic growth defect

FSW = 0.0503

Unknown

UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) UBIQUITIN-SPECIFIC PROTEASE
AT3G22142

Predicted

Synthetic Lethality

FSW = 0.1440

Unknown

STRUCTURAL CONSTITUENT OF CELL WALL
AT3G22480

Predicted

Phenotypic Suppression

FSW = 0.1193

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G24200

Predicted

synthetic growth defect

FSW = 0.0239

Unknown

FAD BINDING / MONOOXYGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON PAIRED DONORS WITH INCORPORATION OR REDUCTION OF MOLECULAR OXYGEN NADH OR NADPH AS ONE DONOR AND INCORPORATION OF ONE ATOM OF OXYGEN
AT4G08500

Predicted

synthetic growth defect

FSW = 0.0092

Unknown

MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING
AT4G11920

Predicted

synthetic growth defect

FSW = 0.1231

Unknown

CCS52A2 SIGNAL TRANSDUCER
AT4G19003

Predicted

synthetic growth defect

FSW = 0.0721

Unknown

VPS25
AT4G27180

Predicted

Synthetic Lethality

FSW = 0.1633

Unknown

ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT4G32530

Predicted

Synthetic Lethality

FSW = 0.0125

Unknown

VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE
AT4G33240

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1798

Unknown

1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT5G02310

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0503

Unknown

PRT6 (PROTEOLYSIS 6) UBIQUITIN-PROTEIN LIGASE
AT5G10400Predicted

biochemical

biochemical

FSW = 0.1328

Unknown

HISTONE H3
AT5G13680

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1606

Unknown

ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT5G27970Predicted

synthetic growth defect

FSW = 0.2405

Unknown

BINDING
AT5G41700

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Phylogenetic profile method

FSW = 0.2206

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G43500

Predicted

synthetic growth defect

FSW = 0.2666

Unknown

ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G45600

Predicted

Synthetic Lethality

FSW = 0.2613

Unknown

GAS41 PROTEIN BINDING
AT5G50320

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1464

Unknown

ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G63670

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1257

Unknown

SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT5G65180

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1418

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)
AT3G15080

Predicted

interaction prediction

FSW = 0.0141

Unknown

EXONUCLEASE FAMILY PROTEIN
AT2G32790

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0847

Unknown

UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT1G14400

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.6430

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT2G16740

Predicted

Shared biological function

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0447

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT5G62540

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.2230

Unknown

UBC3 (UBIQUITIN-CONJUGATING ENZYME 3) UBIQUITIN-PROTEIN LIGASE
AT5G59300

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0706

Unknown

UBC7 (UBIQUITIN CARRIER PROTEIN 7) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G57870

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0623

Unknown

SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE
AT3G55380

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.1512

Unknown

UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE
AT5G56150

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.1022

Unknown

UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE
AT1G45050

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.0700

Unknown

ATUBC2-1 UBIQUITIN-PROTEIN LIGASE
AT3G46460

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.1573

Unknown

UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE
AT3G08690

Predicted

Shared biological function

Phylogenetic profile method

FSW = 0.1277

Unknown

UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE
AT5G25760

Predicted

Phylogenetic profile method

FSW = 0.1807

Unknown

PEX4 (PEROXIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G27960

Predicted

Phylogenetic profile method

FSW = 0.0876

Unknown

UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE
AT5G53300

Predicted

Phylogenetic profile method

FSW = 0.1095

Unknown

UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE
AT3G08700

Predicted

Phylogenetic profile method

FSW = 0.1305

Unknown

UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT5G42990

Predicted

Phylogenetic profile method

FSW = 0.1533

Unknown

UBC18 (UBIQUITIN-CONJUGATING ENZYME 18) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454