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AT2G02760 - ( ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) ubiquitin-protein ligase )

150 Proteins interacs with AT2G02760

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G44950	Experimental two hybrid	FSW = 0.4509	Unknown	HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G55250	Experimental	FSW = 0.0413	Unknown	HUB2 (HISTONE MONO-UBIQUITINATION 2) PROTEIN BINDING / ZINC ION BINDING
AT1G55255	Experimental two hybrid	FSW = 0.2126	Unknown	HUB2 (HISTONE MONO-UBIQUITINATION 2) PROTEIN BINDING / ZINC ION BINDING
AT1G76030	Predicted synthetic growth defect	FSW = 0.0270	Unknown	VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT
AT4G02620	Predicted synthetic growth defect	FSW = 0.0614	Unknown	VACUOLAR ATPASE SUBUNIT F FAMILY PROTEIN
AT1G12840	Predicted synthetic growth defect	FSW = 0.0267	Unknown	DET3 (DE-ETIOLATED 3) PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G58730	Predicted synthetic growth defect	FSW = 0.0431	Unknown	VACUOLAR ATP SYNTHASE SUBUNIT D (VATD) / V-ATPASE D SUBUNIT / VACUOLAR PROTON PUMP D SUBUNIT (VATPD)
AT5G45130	Predicted Phenotypic Enhancement	FSW = 0.0590	Unknown	RHA1 (RAB HOMOLOG 1) GTP BINDING
AT1G36340	Predicted Phylogenetic profile method	FSW = 0.1496	Unknown	UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT5G55400	Predicted Synthetic Lethality	FSW = 0.0326	Unknown	FIMBRIN-LIKE PROTEIN PUTATIVE
AT2G38020	Predicted synthetic growth defect	FSW = 0.0675	Unknown	VCL1 (VACUOLELESS 1)
AT3G22110	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.0676	Unknown	PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G14800	Predicted Affinity Capture-Western	FSW = 0.0441	Unknown	PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G38495	Predicted Synthetic Lethality	FSW = 0.0417	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YL1 NUCLEAR C-TERMINAL (INTERPROIPR013272) HAS 189 BLAST HITS TO 189 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 80 FUNGI - 83 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 9 (SOURCE NCBI BLINK)
AT3G19980	Predicted Synthetic Lethality	FSW = 0.0283	Unknown	ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G11870	Predicted synthetic growth defect	FSW = 0.0167	Unknown	SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE
AT5G56940	Predicted synthetic growth defect	FSW = 0.0070	Unknown	RIBOSOMAL PROTEIN S16 FAMILY PROTEIN
AT5G16630	Predicted Phenotypic Enhancement	FSW = 0.0570	Unknown	RAD4 DAMAGED DNA BINDING
AT2G28190	Predicted Phenotypic Enhancement Synthetic Lethality	FSW = 0.2634	Unknown	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT3G11630	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality	FSW = 0.1295	Unknown	2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT4G01310	Predicted synthetic growth defect	FSW = 0.0213	Unknown	RIBOSOMAL PROTEIN L5 FAMILY PROTEIN
AT2G41670	Predicted Synthetic Lethality	FSW = 0.0146	Unknown	GTP-BINDING FAMILY PROTEIN
AT4G01690	Predicted Synthetic Lethality	FSW = 0.1472	Unknown	PPOX PROTOPORPHYRINOGEN OXIDASE
AT1G12520	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.2555	Unknown	ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT5G63110	Predicted Synthetic Rescue synthetic growth defect	FSW = 0.2023	Unknown	HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT4G35800	Predicted Affinity Capture-Western	FSW = 0.0836	Unknown	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
ATCG00790	Predicted synthetic growth defect	FSW = 0.0106	Unknown	CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT
ATCG00830	Predicted synthetic growth defect	FSW = 0.0105	Unknown	ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
AT3G48750	Predicted Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.0287	Unknown	CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G23630	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.0655	Unknown	ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT1G11890	Predicted Phenotypic Enhancement	FSW = 0.1497	Unknown	SEC22 TRANSPORTER
AT2G30110	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0213	Unknown	ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE
AT1G64230	Predicted Shared biological function Phylogenetic profile method	FSW = 0.1559	Unknown	UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT5G19990	Predicted Synthetic Lethality	FSW = 0.0332	Unknown	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE
AT2G30260	Predicted synthetic growth defect	FSW = 0.0350	Unknown	U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G67270	Predicted synthetic growth defect	FSW = 0.2460	Unknown	ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT5G41580	Predicted Synthetic Rescue	FSW = 0.0474	Unknown	ZINC ION BINDING
AT3G12810	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality synthetic growth defect	FSW = 0.2027	Unknown	PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G75230	Predicted Phenotypic Enhancement	FSW = 0.0460	Unknown	HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN
AT3G16980	Predicted Synthetic Lethality	FSW = 0.0661	Unknown	NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT5G64630	Predicted Phenotypic Enhancement	FSW = 0.1236	Unknown	FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G03190	Predicted Phenotypic Enhancement	FSW = 0.1311	Unknown	UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT2G35670	Predicted Synthetic Lethality	FSW = 0.1465	Unknown	FIS2 (FERTILIZATION INDEPENDENT SEED 2) TRANSCRIPTION FACTOR
AT1G07370	Predicted Synthetic Rescue Synthetic Rescue Phenotypic Enhancement	FSW = 0.2728	Unknown	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT2G36740	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.2016	Unknown	SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT3G19210	Predicted synthetic growth defect	FSW = 0.2538	Unknown	ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G37470	Predicted biochemical	FSW = 0.0218	Unknown	HISTONE H2B PUTATIVE
AT2G38560	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1952	Unknown	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT1G07470	Predicted interaction prediction	FSW = 0.0109	Unknown	TRANSCRIPTION FACTOR IIA LARGE SUBUNIT PUTATIVE / TFIIA LARGE SUBUNIT PUTATIVE
AT1G01040	Predicted Phenotypic Enhancement Synthetic Rescue	FSW = 0.0345	Unknown	DCL1 (DICER-LIKE 1) ATP-DEPENDENT HELICASE/ DOUBLE-STRANDED RNA BINDING / PROTEIN BINDING / RIBONUCLEASE III
AT2G04540	Predicted synthetic growth defect	FSW = 0.0143	Unknown	3-OXOACYL-(ACYL-CARRIER-PROTEIN) SYNTHASE II PUTATIVE
AT2G46320	Predicted Synthetic Lethality	FSW = 0.0143	Unknown	MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT3G17465	Predicted synthetic growth defect	FSW = 0.0207	Unknown	RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G71270	Predicted synthetic growth defect	FSW = 0.0355	Unknown	POK (POKY POLLEN TUBE)
AT5G66020	Predicted synthetic growth defect	FSW = 0.0843	Unknown	ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT5G41150	Predicted Phenotypic Enhancement synthetic growth defect	FSW = 0.0965	Unknown	UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) SINGLE-STRANDED DNA SPECIFIC ENDODEOXYRIBONUCLEASE
AT1G13060	Predicted Co-purification	FSW = 0.0498	Unknown	PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT2G31970	Predicted synthetic growth defect	FSW = 0.2578	Unknown	RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G57450	Predicted Synthetic Lethality synthetic growth defect	FSW = 0.2031	Unknown	XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT5G66130	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1340	Unknown	ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)
AT5G19910	Predicted synthetic growth defect	FSW = 0.2233	Unknown	SOH1 FAMILY PROTEIN
AT3G28030	Predicted Phenotypic Enhancement	FSW = 0.0695	Unknown	UVH3 (ULTRAVIOLET HYPERSENSITIVE 3) DNA BINDING / CATALYTIC/ ENDONUCLEASE/ NUCLEASE/ SINGLE-STRANDED DNA BINDING
AT5G54260	Predicted synthetic growth defect	FSW = 0.2616	Unknown	MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G38470	Predicted Phenotypic Enhancement Phenotypic Enhancement synthetic growth defect	FSW = 0.0908	Unknown	DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G20850	Predicted Phenotypic Enhancement synthetic growth defect Phenotypic Enhancement	FSW = 0.1890	Unknown	ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT3G54860	Predicted synthetic growth defect	FSW = 0.1179	Unknown	VACUOLAR PROTEIN SORTING PROTEIN PUTATIVE
AT1G04020	Predicted Affinity Capture-MS Affinity Capture-MS two hybrid far western blotting Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS two hybrid Affinity Capture-Western Reconstituted Complex Phenotypic Enhancement	FSW = 0.3993	Unknown	BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G04730	Predicted synthetic growth defect	FSW = 0.2463	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G12470	Predicted synthetic growth defect	FSW = 0.1004	Unknown	PEP3/VPS18/DEEP ORANGE FAMILY PROTEIN
AT1G24290	Predicted synthetic growth defect Synthetic Lethality	FSW = 0.0932	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G34150	Predicted Phenotypic Suppression	FSW = 0.1249	Unknown	TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G49540	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1638	Unknown	NUCLEOTIDE BINDING
AT1G51710	Predicted Synthetic Lethality Synthetic Lethality Phenotypic Enhancement	FSW = 0.2066	Unknown	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G52740	Predicted Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality Synthetic Lethality	FSW = 0.2249	Unknown	HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G59890	Predicted synthetic growth defect	FSW = 0.2448	Unknown	SNL5 (SIN3-LIKE 5)
AT1G60430	Predicted Synthetic Lethality	FSW = 0.0519	Unknown	ARPC3 (ACTIN-RELATED PROTEIN C3) STRUCTURAL MOLECULE
AT1G63660	Predicted Synthetic Lethality	FSW = 0.0038	Unknown	GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE
AT1G66740	Predicted synthetic growth defect	FSW = 0.2763	Unknown	SGA2
AT1G67190	Predicted Synthetic Lethality	FSW = 0.2633	Unknown	F-BOX FAMILY PROTEIN
AT1G67500	Predicted Synthetic Rescue synthetic growth defect Phenotypic Enhancement	FSW = 0.1111	Unknown	ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3) DNA BINDING / DNA-DIRECTED DNA POLYMERASE
AT1G79730	Predicted Affinity Capture-Western	FSW = 0.1814	Unknown	ELF7 (EARLY FLOWERING 7)
AT1G08840	Predicted synthetic growth defect	FSW = 0.1369	Unknown	EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING
AT1G21710	Predicted Phenotypic Enhancement	FSW = 0.0414	Unknown	OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1) OXIDIZED PURINE BASE LESION DNA N-GLYCOSYLASE
AT1G54140	Predicted Synthetic Lethality	FSW = 0.1418	Unknown	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G54390	Predicted Synthetic Lethality	FSW = 0.0860	Unknown	PHD FINGER PROTEIN-RELATED
AT1G55915	Predicted Phenotypic Enhancement	FSW = 0.0698	Unknown	ZINC ION BINDING
AT2G06040	Predicted Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.0306	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK)
AT2G23070	Predicted Phenotypic Suppression	FSW = 0.0294	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G44580	Predicted synthetic growth defect	FSW = 0.2757	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT2G45700	Predicted Phenotypic Enhancement	FSW = 0.0483	Unknown	STERILE ALPHA MOTIF (SAM) DOMAIN-CONTAINING PROTEIN
AT3G02820	Predicted synthetic growth defect	FSW = 0.2016	Unknown	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G18860	Predicted synthetic growth defect	FSW = 0.2036	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G24010	Predicted Synthetic Rescue	FSW = 0.0121	Unknown	ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G42660	Predicted Synthetic Lethality	FSW = 0.3108	Unknown	NUCLEOTIDE BINDING
AT3G45630	Predicted synthetic growth defect	FSW = 0.0331	Unknown	RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G58560	Predicted Synthetic Lethality	FSW = 0.1819	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G25120	Predicted Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue Synthetic Rescue synthetic growth defect Synthetic Rescue	FSW = 0.2811	Unknown	ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT4G30870	Predicted synthetic growth defect	FSW = 0.1108	Unknown	MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT4G38630	Predicted Synthetic Lethality synthetic growth defect Phenotypic Enhancement Synthetic Lethality	FSW = 0.1845	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G09740	Predicted Synthetic Lethality	FSW = 0.1630	Unknown	HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G10260	Predicted Phenotypic Enhancement synthetic growth defect	FSW = 0.1531	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10270	Predicted Synthetic Lethality synthetic growth defect Synthetic Lethality	FSW = 0.2172	Unknown	CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G10390	Predicted Phenotypic Suppression	FSW = 0.1017	Unknown	HISTONE H3
AT5G10960	Predicted Synthetic Lethality	FSW = 0.2215	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G13780	Predicted synthetic growth defect	FSW = 0.2821	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G26680	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.2670	Unknown	ENDONUCLEASE PUTATIVE
AT5G42000	Predicted Phenotypic Enhancement	FSW = 0.0800	Unknown	ORMDL FAMILY PROTEIN
AT5G49510	Predicted Phenotypic Suppression	FSW = 0.1409	Unknown	PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT2G44150	Predicted Synthetic Lethality	FSW = 0.1401	Unknown	ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT3G01090	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.0577	Unknown	AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G06460	Predicted synthetic growth defect	FSW = 0.0146	Unknown	GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G09560	Predicted Synthetic Lethality	FSW = 0.0633	Unknown	LIPIN FAMILY PROTEIN
AT3G11450	Predicted Synthetic Lethality	FSW = 0.0103	Unknown	DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN / CELL DIVISION PROTEIN-RELATED
AT3G20630	Predicted synthetic growth defect	FSW = 0.0503	Unknown	UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14) UBIQUITIN-SPECIFIC PROTEASE
AT3G22142	Predicted Synthetic Lethality	FSW = 0.1440	Unknown	STRUCTURAL CONSTITUENT OF CELL WALL
AT3G22480	Predicted Phenotypic Suppression	FSW = 0.1193	Unknown	PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G24200	Predicted synthetic growth defect	FSW = 0.0239	Unknown	FAD BINDING / MONOOXYGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON PAIRED DONORS WITH INCORPORATION OR REDUCTION OF MOLECULAR OXYGEN NADH OR NADPH AS ONE DONOR AND INCORPORATION OF ONE ATOM OF OXYGEN
AT4G08500	Predicted synthetic growth defect	FSW = 0.0092	Unknown	MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING
AT4G11920	Predicted synthetic growth defect	FSW = 0.1231	Unknown	CCS52A2 SIGNAL TRANSDUCER
AT4G19003	Predicted synthetic growth defect	FSW = 0.0721	Unknown	VPS25
AT4G27180	Predicted Synthetic Lethality	FSW = 0.1633	Unknown	ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT4G32530	Predicted Synthetic Lethality	FSW = 0.0125	Unknown	VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE
AT4G33240	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.1798	Unknown	1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT5G02310	Predicted Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western	FSW = 0.0503	Unknown	PRT6 (PROTEOLYSIS 6) UBIQUITIN-PROTEIN LIGASE
AT5G10400	Predicted biochemical biochemical	FSW = 0.1328	Unknown	HISTONE H3
AT5G13680	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1606	Unknown	ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT5G27970	Predicted synthetic growth defect	FSW = 0.2405	Unknown	BINDING
AT5G41700	Predicted Phenotypic Enhancement Phenotypic Enhancement Phylogenetic profile method	FSW = 0.2206	Unknown	UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G43500	Predicted synthetic growth defect	FSW = 0.2666	Unknown	ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G45600	Predicted Synthetic Lethality	FSW = 0.2613	Unknown	GAS41 PROTEIN BINDING
AT5G50320	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1464	Unknown	ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G63670	Predicted Synthetic Lethality Synthetic Lethality	FSW = 0.1257	Unknown	SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT5G65180	Predicted synthetic growth defect Phenotypic Enhancement	FSW = 0.1418	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)
AT3G15080	Predicted interaction prediction	FSW = 0.0141	Unknown	EXONUCLEASE FAMILY PROTEIN
AT2G32790	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.0847	Unknown	UBIQUITIN-CONJUGATING ENZYME PUTATIVE
AT1G14400	Predicted Gene fusion method Phylogenetic profile method Co-expression	FSW = 0.6430	Unknown	UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT2G16740	Predicted Shared biological function Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.0447	Unknown	UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT5G62540	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.2230	Unknown	UBC3 (UBIQUITIN-CONJUGATING ENZYME 3) UBIQUITIN-PROTEIN LIGASE
AT5G59300	Predicted Phylogenetic profile method Co-expression	FSW = 0.0706	Unknown	UBC7 (UBIQUITIN CARRIER PROTEIN 7) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G57870	Predicted Phylogenetic profile method Co-expression	FSW = 0.0623	Unknown	SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE
AT3G55380	Predicted Shared biological function Phylogenetic profile method	FSW = 0.1512	Unknown	UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE
AT5G56150	Predicted Shared biological function Phylogenetic profile method	FSW = 0.1022	Unknown	UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE
AT1G45050	Predicted Shared biological function Phylogenetic profile method	FSW = 0.0700	Unknown	ATUBC2-1 UBIQUITIN-PROTEIN LIGASE
AT3G46460	Predicted Shared biological function Phylogenetic profile method	FSW = 0.1573	Unknown	UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE
AT3G08690	Predicted Shared biological function Phylogenetic profile method	FSW = 0.1277	Unknown	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE
AT5G25760	Predicted Phylogenetic profile method	FSW = 0.1807	Unknown	PEX4 (PEROXIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT4G27960	Predicted Phylogenetic profile method	FSW = 0.0876	Unknown	UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE
AT5G53300	Predicted Phylogenetic profile method	FSW = 0.1095	Unknown	UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE
AT3G08700	Predicted Phylogenetic profile method	FSW = 0.1305	Unknown	UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE
AT5G42990	Predicted Phylogenetic profile method	FSW = 0.1533	Unknown	UBC18 (UBIQUITIN-CONJUGATING ENZYME 18) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT2G02760 - ( ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) ubiquitin-protein ligase )

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