Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G03710 - ( SEP4 (SEPALLATA 4) DNA binding / transcription factor )

21 Proteins interacs with AT2G03710
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G69120

Experimental

two hybrid

FSW = 0.2315

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

AP1 (APETALA1) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR
AT1G31640

Experimental

two hybrid

FSW = 0.1390

Class A:

nucleus

Class D:

nucleus (p = 0.78)

AGL92 (AGAMOUS-LIKE 92) DNA BINDING / TRANSCRIPTION FACTOR
AT5G23260

Experimental

two hybrid

FSW = 0.2986

Class A:

nucleus

Class D:

nucleus (p = 0.78)

TT16 (TRANSPARENT TESTA16) TRANSCRIPTION FACTOR
AT5G38620

Experimental

FSW = 0.1286

Class A:

nucleus

Class D:

nucleus (p = 0.78)

MADS-BOX PROTEIN (AGL73)
AT1G48150

Experimental

two hybrid

FSW = 0.1286

Class A:

nucleus

Class D:

nucleus (p = 0.78)

MADS-BOX PROTEIN (AGL74 )
AT1G31630

Experimental

two hybrid

FSW = 0.0896

Class B:

nucleus

cytosol

AGL86 (AGAMOUS-LIKE 86) DNA BINDING / TRANSCRIPTION FACTOR
AT2G45660

Experimental

two hybrid

FSW = 0.1469

Class D:

nucleus (p = 0.78)

AGL20 (AGAMOUS-LIKE 20) TRANSCRIPTION FACTOR
AT5G60910

Experimental

two hybrid

FSW = 0.1949

Class D:

nucleus (p = 0.78)

AGL8 (AGAMOUS-LIKE 8) TRANSCRIPTION FACTOR
AT1G29962

Experimental

FSW = 0.0606

Unknown

AGL64 (AGAMOUS-LIKE 64) TRANSCRIPTION FACTOR
AT1G46408

Experimental

two hybrid

FSW = 0.0879

Unknown

AGL97 (AGAMOUS-LIKE 97) DNA BINDING / TRANSCRIPTION FACTOR
AT4G14640

Experimental

protein array

FSW = 0.0121

Unknown

CAM8 (CALMODULIN 8) CALCIUM ION BINDING
AT1G77980

Experimental

two hybrid

FSW = 0.0368

Unknown

AGL66 (AGAMOUS-LIKE 66) TRANSCRIPTION FACTOR
AT5G59690Predicted

Affinity Capture-MS

FSW = 0.0053

Class C:

nucleus

HISTONE H4
AT4G02060

Predicted

interologs mapping

Synthetic Rescue

Reconstituted Complex

FSW = 0.0369

Class C:

nucleus

PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G58780

Predicted

two hybrid

two hybrid

Affinity Capture-Western

FSW = 0.2825

Unknown

SHP1 (SHATTERPROOF 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT1G04950

Predicted

Affinity Capture-MS

FSW = 0.0209

Unknown

TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G26450

Predicted

interologs mapping

FSW = 0.0095

Unknown

BETA-13-GLUCANASE-RELATED
AT1G55300

Predicted

Affinity Capture-MS

FSW = 0.0105

Unknown

TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT3G25100

Predicted

Affinity Capture-Western

FSW = 0.0176

Unknown

CDC45 (CELL DIVISION CYCLE 45)
AT5G62165

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3379

Unknown

AGL42 (AGAMOUS LIKE 42) TRANSCRIPTION FACTOR
AT1G63630

Predicted

Gene fusion method

FSW = 0.0381

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454