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AT2G03870 - ( small nuclear ribonucleoprotein putative / snRNP putative / Sm protein putative )

110 Proteins interacs with AT2G03870

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G15090	Predicted Affinity Capture-MS	FSW = 0.0112	Class C: nucleus	VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL
AT1G20960	Predicted Co-purification Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.1785	Class C: nucleus	EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G12780	Predicted Protein-RNA	FSW = 0.0675	Class C: nucleus	PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE
AT5G08290	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2057	Class C: nucleus	YLS8 CATALYTIC
AT2G44680	Predicted Phenotypic Enhancement	FSW = 0.1025	Class C: nucleus	CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT5G67270	Predicted Phenotypic Enhancement	FSW = 0.2086	Class C: nucleus	ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT3G12810	Predicted Phenotypic Enhancement	FSW = 0.1897	Class C: nucleus	PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G43810	Predicted two hybrid two hybrid Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Phenotypic Enhancement Colocalization interologs mapping interaction prediction Co-expression	FSW = 0.4707	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT4G30220	Predicted two hybrid two hybrid Co-expression	FSW = 0.1950	Class C: nucleus	RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
AT1G19120	Predicted two hybrid Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Colocalization Co-purification interologs mapping in vitro interaction prediction Co-expression	FSW = 0.3919	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G59810	Predicted in vitro	FSW = 0.1469	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT2G47640	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction Co-expression	FSW = 0.1447	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE
AT3G44530	Predicted Synthetic Lethality	FSW = 0.0747	Class C: nucleus	HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT2G41500	Predicted two hybrid Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.2100	Class C: nucleus	EMB2776 NUCLEOTIDE BINDING
AT1G76300	Predicted two hybrid two hybrid two hybrid Co-expression	FSW = 0.0175	Class C: nucleus	SMD3 (SNRNP CORE PROTEIN SMD3)
AT5G27720	Predicted two hybrid two hybrid Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Colocalization interologs mapping in vitro interaction prediction Co-expression	FSW = 0.1758	Class C: nucleus	EMB1644 (EMBRYO DEFECTIVE 1644)
AT1G02740	Predicted Phenotypic Enhancement	FSW = 0.0852	Class C: nucleus	CHROMATIN BINDING
AT1G04510	Predicted Co-purification	FSW = 0.1338	Class C: nucleus	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G18740	Predicted two hybrid	FSW = 0.1530	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT4G30330	Predicted two hybrid two hybrid Co-expression	FSW = 0.1908	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT1G03330	Predicted two hybrid two hybrid Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interologs mapping interaction prediction Co-expression	FSW = 0.2935	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN D PUTATIVE / SNRNP CORE SM-LIKE PROTEIN PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE
AT1G76860	Predicted interaction prediction two hybrid two hybrid in vitro Affinity Capture-MS two hybrid two hybrid Colocalization Affinity Capture-MS in vitro Phylogenetic profile method Co-expression	FSW = 0.3183	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G21190	Predicted two hybrid Affinity Capture-MS Affinity Capture-MS two hybrid Phylogenetic profile method Co-expression	FSW = 0.2134	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT5G48870	Predicted interaction prediction two hybrid two hybrid two hybrid two hybrid two hybrid two hybrid Affinity Capture-MS Colocalization interologs mapping in vitro Co-expression	FSW = 0.2451	Class C: nucleus	SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING
AT4G18040	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0157	Class C: nucleus	EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR
AT1G65700	Predicted in vitro Co-expression	FSW = 0.0628	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G20580	Predicted Affinity Capture-MS	FSW = 0.1866	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT1G28060	Predicted Affinity Capture-MS	FSW = 0.1820	Class C: nucleus	SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN
AT1G65470	Predicted Phenotypic Suppression	FSW = 0.1692	Class C: nucleus	FAS1 (FASCIATA 1) HISTONE BINDING
AT3G19210	Predicted Synthetic Lethality	FSW = 0.1776	Class C: nucleus	ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G25210	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.0454	Class C: nucleus	TRANSCRIPTION REGULATOR
AT2G13370	Predicted Phenotypic Enhancement	FSW = 0.0785	Class C: nucleus	CHR5 (CHROMATIN REMODELING 5) ATP BINDING / DNA BINDING / CHROMATIN BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G36740	Predicted Phenotypic Enhancement	FSW = 0.1548	Class C: nucleus	SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G38560	Predicted Phenotypic Enhancement	FSW = 0.1137	Class C: nucleus	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT5G08630	Predicted Phenotypic Enhancement	FSW = 0.0333	Class C: nucleus	DDT DOMAIN-CONTAINING PROTEIN
AT5G45130	Predicted Phenotypic Suppression	FSW = 0.0175	Unknown	RHA1 (RAB HOMOLOG 1) GTP BINDING
AT1G64790	Predicted Phenotypic Enhancement	FSW = 0.0939	Unknown	BINDING
AT3G22110	Predicted Phenotypic Suppression	FSW = 0.0544	Unknown	PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT1G69740	Predicted Affinity Capture-MS	FSW = 0.0126	Unknown	HEMB1 CATALYTIC/ METAL ION BINDING / PORPHOBILINOGEN SYNTHASE
AT1G80070	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1598	Unknown	SUS2 (ABNORMAL SUSPENSOR 2)
AT3G11630	Predicted synthetic growth defect	FSW = 0.0416	Unknown	2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT1G12520	Predicted Phenotypic Suppression	FSW = 0.1470	Unknown	ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT2G33340	Predicted Co-purification	FSW = 0.1259	Unknown	NUCLEOTIDE BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G58230	Predicted Phenotypic Enhancement	FSW = 0.0466	Unknown	MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT5G23630	Predicted Phenotypic Enhancement	FSW = 0.0422	Unknown	ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT1G11890	Predicted Phenotypic Enhancement	FSW = 0.0868	Unknown	SEC22 TRANSPORTER
AT4G26110	Predicted Phenotypic Suppression	FSW = 0.0279	Unknown	NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING
AT5G02490	Predicted Affinity Capture-MS	FSW = 0.0211	Unknown	HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2)
AT4G19690	Predicted interologs mapping	FSW = 0.0111	Unknown	IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT2G31970	Predicted synthetic growth defect	FSW = 0.1476	Unknown	RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G57450	Predicted synthetic growth defect	FSW = 0.1532	Unknown	XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT5G19910	Predicted Phenotypic Enhancement	FSW = 0.1702	Unknown	SOH1 FAMILY PROTEIN
AT2G22310	Predicted Phenotypic Suppression	FSW = 0.0105	Unknown	ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE
AT5G20850	Predicted Synthetic Lethality	FSW = 0.1125	Unknown	ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT5G54260	Predicted synthetic growth defect	FSW = 0.1692	Unknown	MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G36200	Predicted Synthetic Lethality	FSW = 0.1404	Unknown	KINESIN MOTOR PROTEIN-RELATED
AT3G12280	Predicted Phenotypic Enhancement	FSW = 0.0042	Unknown	RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT2G04845	Predicted two hybrid two hybrid Co-expression	FSW = 0.0101	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN
AT4G28820	Predicted two hybrid two hybrid	FSW = 0.0094	Unknown	ZINC FINGER (HIT TYPE) FAMILY PROTEIN
AT1G08880	Predicted Phenotypic Suppression	FSW = 0.0357	Unknown	H2AXA DNA BINDING
AT1G29990	Predicted Phenotypic Suppression	FSW = 0.1299	Unknown	PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G34150	Predicted Phenotypic Suppression	FSW = 0.0768	Unknown	TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G64550	Predicted Phenotypic Enhancement	FSW = 0.0111	Unknown	ATGCN3 TRANSPORTER
AT1G66740	Predicted Synthetic Lethality Phenotypic Enhancement	FSW = 0.1971	Unknown	SGA2
AT1G04020	Predicted synthetic growth defect	FSW = 0.1785	Unknown	BARD1 (BREAST CANCER ASSOCIATED RING 1) DNA BINDING / TRANSCRIPTION COACTIVATOR
AT1G04730	Predicted synthetic growth defect	FSW = 0.2107	Unknown	AAA-TYPE ATPASE FAMILY PROTEIN
AT1G52740	Predicted Phenotypic Enhancement	FSW = 0.1459	Unknown	HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G54320	Predicted Phenotypic Enhancement	FSW = 0.0197	Unknown	LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT1G59890	Predicted Phenotypic Suppression	FSW = 0.1828	Unknown	SNL5 (SIN3-LIKE 5)
AT1G60170	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.2322	Unknown	EMB1220 (EMBRYO DEFECTIVE 1220)
AT1G80410	Predicted synthetic growth defect	FSW = 0.1194	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G23070	Predicted Phenotypic Suppression	FSW = 0.0280	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G44580	Predicted synthetic growth defect	FSW = 0.1977	Unknown	PROTEIN BINDING / ZINC ION BINDING
AT2G47090	Predicted two hybrid Affinity Capture-MS biochemical two hybrid Affinity Capture-Western	FSW = 0.0334	Unknown	NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G02820	Predicted Synthetic Lethality	FSW = 0.1300	Unknown	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G05760	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0831	Unknown	NUCLEIC ACID BINDING / ZINC ION BINDING
AT3G06670	Predicted Phenotypic Enhancement	FSW = 0.0405	Unknown	BINDING
AT3G42660	Predicted Synthetic Lethality Co-expression	FSW = 0.2279	Unknown	NUCLEOTIDE BINDING
AT3G58560	Predicted Synthetic Lethality	FSW = 0.1529	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G00660	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1099	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT4G03430	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.1436	Unknown	EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM
AT4G25120	Predicted synthetic growth defect	FSW = 0.1290	Unknown	ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT4G27180	Predicted Phenotypic Enhancement	FSW = 0.1034	Unknown	ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT4G32720	Predicted Synthetic Lethality	FSW = 0.0415	Unknown	ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1) RNA BINDING
AT5G01770	Predicted Affinity Capture-MS	FSW = 0.0028	Unknown	RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT5G09230	Predicted Phenotypic Enhancement	FSW = 0.0769	Unknown	SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING
AT5G10960	Predicted Synthetic Lethality	FSW = 0.1763	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G13780	Predicted synthetic growth defect	FSW = 0.1887	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G26680	Predicted Synthetic Lethality	FSW = 0.1528	Unknown	ENDONUCLEASE PUTATIVE
AT5G41770	Predicted Affinity Capture-MS	FSW = 0.0593	Unknown	CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT2G34980	Predicted Affinity Capture-MS	FSW = 0.0040	Unknown	SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE
AT2G44150	Predicted Phenotypic Enhancement	FSW = 0.0848	Unknown	ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT3G04710	Predicted two hybrid	FSW = 0.0641	Unknown	ANKYRIN REPEAT FAMILY PROTEIN
AT3G18860	Predicted Phenotypic Enhancement	FSW = 0.1671	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G04210	Predicted Phenotypic Suppression	FSW = 0.1116	Unknown	PUX4 PROTEIN BINDING
AT4G17640	Predicted Affinity Capture-MS	FSW = 0.0166	Unknown	CKB2 PROTEIN KINASE CK2 REGULATOR
AT5G10260	Predicted Phenotypic Suppression	FSW = 0.0964	Unknown	ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G10790	Predicted Phenotypic Suppression	FSW = 0.1186	Unknown	UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G37830	Predicted Affinity Capture-MS	FSW = 0.0086	Unknown	OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE
AT5G38890	Predicted Synthetic Rescue	FSW = 0.0108	Unknown	EXORIBONUCLEASE-RELATED
AT5G41340	Predicted Phenotypic Enhancement	FSW = 0.0345	Unknown	UBC4 (UBIQUITIN CONJUGATING ENZYME 4) UBIQUITIN-PROTEIN LIGASE
AT5G41700	Predicted Phenotypic Suppression	FSW = 0.0783	Unknown	UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G61010	Predicted Affinity Capture-MS	FSW = 0.0111	Unknown	ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) PROTEIN BINDING
AT5G61770	Predicted Phenotypic Suppression	FSW = 0.0067	Unknown	PPAN (PETER PAN-LIKE PROTEIN)
AT2G45810	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0848	Unknown	DEAD/DEAH BOX HELICASE PUTATIVE
AT1G29550	Predicted Affinity Capture-MS	FSW = 0.0139	Unknown	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E PUTATIVE / EIF-4E PUTATIVE / EIF4E PUTATIVE / MRNA CAP-BINDING PROTEIN PUTATIVE
AT1G79880	Predicted Synthetic Lethality	FSW = 0.0615	Unknown	LA DOMAIN-CONTAINING PROTEIN
AT1G15920	Predicted Synthetic Lethality	FSW = 0.1300	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT1G60080	Predicted two hybrid Co-expression	FSW = 0.0194	Unknown	3 EXORIBONUCLEASE FAMILY DOMAIN 1-CONTAINING PROTEIN
AT5G15770	Predicted interaction prediction	FSW = 0.0882	Unknown	ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE

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Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT2G03870 - ( small nuclear ribonucleoprotein putative / snRNP putative / Sm protein putative )

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