Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G04390 - ( 40S ribosomal protein S17 (RPS17A) )
47 Proteins interacs with AT2G04390| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G67430
   | PredictedAffinity Capture-MS | FSW = 0.0557
| Class C:plasma membranenucleus | 60S RIBOSOMAL PROTEIN L17 (RPL17B) |
| AT1G72370
| PredictedAffinity Capture-MS | FSW = 0.0377
| Class C:plasma membranenucleus | P40 STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G58510
| PredictedAffinity Capture-MS | FSW = 0.0884
| Class C:plasma membranenucleus | DEAD BOX RNA HELICASE PUTATIVE (RH11) |
| AT3G09840
| PredictedAffinity Capture-MS | FSW = 0.0150
| Class C:plasma membranenucleus | CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING |
| AT5G06680
| PredictedSynthetic Lethality | FSW = 0.0200
| Class C:plasma membranenucleus | SPC98 (SPINDLE POLE BODY COMPONENT 98) TUBULIN BINDING |
| AT1G07770
| PredictedAffinity Capture-MS | FSW = 0.1908
| Class C:plasma membrane | RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G25800
| PredictedAffinity Capture-MS | FSW = 0.0120
| Class C:plasma membrane | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
| AT5G17310
| PredictedSynthetic Lethality | FSW = 0.0362
| Class C:plasma membrane | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE |
| AT3G11400
| PredictedAffinity Capture-MS | FSW = 0.0792
| Class C:plasma membrane | EUKARYOTIC TRANSLATION INITIATION FACTOR 3G / EIF3G |
| AT1G20960
| PredictedSynthetic Lethality | FSW = 0.0150
| Class C:nucleus | EMB1507 (EMBRYO DEFECTIVE 1507) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
| AT1G03930
| PredictedAffinity Capture-MS | FSW = 0.0463
| Class C:nucleus | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
| AT3G57150
| PredictedAffinity Capture-MS | FSW = 0.0837
| Class C:nucleus | NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) PSEUDOURIDINE SYNTHASE |
| AT3G05060
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0989
| Class C:nucleus | SAR DNA-BINDING PROTEIN PUTATIVE |
| AT1G07370
| PredictedSynthetic Lethality | FSW = 0.0054
| Class C:nucleus | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
| AT1G63810
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1076
| Class C:nucleus | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NRAP PROTEIN (INTERPROIPR005554) HAS 268 BLAST HITS TO 263 PROTEINS IN 124 SPECIES ARCHAE - 3 BACTERIA - 0 METAZOA - 116 FUNGI - 89 PLANTS - 17 VIRUSES - 0 OTHER EUKARYOTES - 43 (SOURCE NCBI BLINK) |
| AT4G11010
| PredictedAffinity Capture-MS | FSW = 0.0188
| Unknown | NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE |
| AT3G06530
| PredictedAffinity Capture-MS | FSW = 0.1247
| Unknown | BINDING |
| AT5G59240
| PredictedAffinity Capture-MS | FSW = 0.1957
| Unknown | 40S RIBOSOMAL PROTEIN S8 (RPS8B) |
| AT4G17620
| PredictedAffinity Capture-MS | FSW = 0.0189
| Unknown | GLYCINE-RICH PROTEIN |
| AT5G14800
| PredictedSynthetic Lethality | FSW = 0.0114
| Unknown | P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE |
| AT3G10610
| PredictedPhylogenetic profile method | FSW = 0.0535
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17C) |
| AT1G10490
| PredictedAffinity Capture-MS | FSW = 0.0981
| Unknown | UNKNOWN PROTEIN |
| AT1G55300
| PredictedSynthetic Lethality | FSW = 0.0089
| Unknown | TAF7 (TBP-ASSOCIATED FACTOR 7) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
| AT1G55460
| PredictedSynthetic Lethality | FSW = 0.0320
| Unknown | KIN17 DNA-BINDING PROTEIN-RELATED |
| AT1G80930
| PredictedSynthetic Lethality | FSW = 0.0492
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
| AT1G03530
| PredictedAffinity Capture-MS | FSW = 0.0300
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
| AT1G15440
| PredictedAffinity Capture-MS | FSW = 0.0629
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G16280
| PredictedAffinity Capture-MS | FSW = 0.0282
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
| AT1G17720
| PredictedAffinity Capture-MS | FSW = 0.0138
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
| AT1G20080
| PredictedAffinity Capture-MS | FSW = 0.0246
| Unknown | SYTB |
| AT1G31660
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1977
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK) |
| AT1G42440
| PredictedAffinity Capture-MS | FSW = 0.1391
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RIBOSOME BIOGENESIS LOCATED IN NUCLEUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S AARP2CN (INTERPROIPR012948) PROTEIN OF UNKNOWN FUNCTION DUF663 (INTERPROIPR007034) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G067201) HAS 2447 BLAST HITS TO 1812 PROTEINS IN 205 SPECIES ARCHAE - 0 BACTERIA - 115 METAZOA - 903 FUNGI - 423 PLANTS - 100 VIRUSES - 53 OTHER EUKARYOTES - 853 (SOURCE NCBI BLINK) |
| AT1G69070
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1263
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NOP14-LIKE PROTEIN (INTERPROIPR007276) HAS 64668 BLAST HITS TO 30830 PROTEINS IN 1152 SPECIES ARCHAE - 207 BACTERIA - 18692 METAZOA - 20758 FUNGI - 6782 PLANTS - 2177 VIRUSES - 523 OTHER EUKARYOTES - 15529 (SOURCE NCBI BLINK) |
| AT2G17250
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1210
| Unknown | EMB2762 (EMBRYO DEFECTIVE 2762) |
| AT2G34357 | PredictedAffinity Capture-MS | FSW = 0.1561
| Unknown | BINDING |
| AT3G51270
| PredictedAffinity Capture-MS | FSW = 0.1709
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE |
| AT3G56150
| PredictedAffinity Capture-MS | FSW = 0.0847
| Unknown | EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) TRANSLATION INITIATION FACTOR |
| AT4G19210
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0650
| Unknown | ATRLI2 TRANSPORTER |
| AT4G38630
| PredictedAffinity Capture-MS | FSW = 0.0034
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
| AT5G46190
| PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | KH DOMAIN-CONTAINING PROTEIN |
| AT2G32600
| PredictedSynthetic Lethality | FSW = 0.0053
| Unknown | HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN |
| AT3G05870
| PredictedSynthetic Lethality | FSW = 0.0133
| Unknown | APC11 PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
| AT4G18230
| PredictedSynthetic Lethality | FSW = 0.0186
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S OLIGOSACCHARIDE BIOSYNTHESIS PROTEIN ALG14 LIKE (INTERPROIPR013969) HAS 453 BLAST HITS TO 453 PROTEINS IN 176 SPECIES ARCHAE - 4 BACTERIA - 199 METAZOA - 76 FUNGI - 83 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 63 (SOURCE NCBI BLINK) |
| AT5G41770
| PredictedSynthetic Lethality | FSW = 0.0148
| Unknown | CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE |
| AT5G41190
| PredictedAffinity Capture-MS | FSW = 0.0307
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
| AT5G04800
| PredictedGene fusion methodPhylogenetic profile method | FSW = 0.0219
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
| AT2G05220
| PredictedPhylogenetic profile method | FSW = 0.1119
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17B) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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