Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G04660 - ( APC2 ubiquitin protein ligase binding / ubiquitin-protein ligase )
42 Proteins interacs with AT2G04660Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48150 | Experimentaltwo hybrid | FSW = 0.1372
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
AT3G05870 | Experimentaltwo hybridAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.2010
| Unknown | APC11 PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT2G18290 | Experimentalinteraction detection methodtwo hybrid | FSW = 0.1416
| Unknown | ANAPHASE-PROMOTING COMPLEX SUBUNIT 10 FAMILY / APC10 FAMILY |
AT3G16320 | Experimentalinteraction detection methodtwo hybrid | FSW = 0.1673
| Unknown | CDC27A BINDING |
AT3G04120 | Predictedtwo hybrid | FSW = 0.0443
| Unknown | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G43170 | Predictedtwo hybrid | FSW = 0.0133
| Unknown | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G14010 | PredictedAffinity Capture-MS | FSW = 0.0060
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G11320 | Predictedtwo hybrid | FSW = 0.0201
| Unknown | UNKNOWN PROTEIN |
AT1G09590 | Predictedtwo hybrid | FSW = 0.0602
| Unknown | 60S RIBOSOMAL PROTEIN L21 (RPL21A) |
AT2G39290 | PredictedAffinity Capture-Westerntwo hybridAffinity Capture-MSinterologs mappinginterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSinterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MStwo hybrid | FSW = 0.0778
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT1G79530 | Predictedtwo hybrid | FSW = 0.0237
| Unknown | GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT5G58800 | PredictedAffinity Capture-MS | FSW = 0.0217
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT1G79920 | Predictedtwo hybrid | FSW = 0.0230
| Unknown | ATP BINDING |
AT3G53870 | Predictedinterologs mappingSynthetic Rescueinterologs mapping | FSW = 0.0211
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3B) |
AT1G79930 | Predictedtwo hybrid | FSW = 0.0252
| Unknown | HSP91 ATP BINDING |
AT3G20060 | Predictedin vitroAffinity Capture-MS | FSW = 0.0460
| Unknown | UBC19 (UBIQUITIN-CONJUGATING ENZYME19) UBIQUITIN-PROTEIN LIGASE |
AT5G47630 | PredictedAffinity Capture-MS | FSW = 0.0197
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT2G30160 | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G20570 | Predictedtwo hybridinteraction predictionCo-expression | FSW = 0.0062
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
AT3G42830 | Predictedtwo hybrid | FSW = 0.0111
| Unknown | RING-BOX PROTEIN ROC1/RBX1/HRT1 PUTATIVE |
AT1G61580 | Predictedtwo hybrid | FSW = 0.0099
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G20850 | Predictedtwo hybridinteraction prediction | FSW = 0.0068
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT1G57860 | Predictedtwo hybrid | FSW = 0.0435
| Unknown | 60S RIBOSOMAL PROTEIN L21 |
AT2G27970 | Predictedtwo hybrid | FSW = 0.0400
| Unknown | CKS2 (CDK-SUBUNIT 2) CYCLIN-DEPENDENT PROTEIN KINASE/ CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G26640 | Predictedtwo hybrid | FSW = 0.0454
| Unknown | UNKNOWN PROTEIN |
AT5G06150 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0066
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G06600 | Predictedtwo hybrid | FSW = 0.0397
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT1G06590 | Predictedin vivoReconstituted ComplexCo-expression | FSW = 0.2795
| Unknown | UNKNOWN PROTEIN |
AT5G05560 | PredictedReconstituted Complex | FSW = 0.2008
| Unknown | EMB2771 (EMBRYO DEFECTIVE 2771) UBIQUITIN-PROTEIN LIGASE |
AT4G21530 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-MS | FSW = 0.2903
| Unknown | NUCLEOTIDE BINDING |
AT1G50090 | PredictedAffinity Capture-MStwo hybridAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1225
| Unknown | AMINOTRANSFERASE CLASS IV FAMILY PROTEIN |
AT1G78770 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappingCo-expression | FSW = 0.0895
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G20000 | Predictedinteraction predictionAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSDosage Growth DefectCo-expression | FSW = 0.1279
| Unknown | HBT (HOBBIT) BINDING |
AT3G06470 | PredictedAffinity Capture-MS | FSW = 0.0373
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.0165
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G59790 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT4G00800 | PredictedAffinity Capture-MS | FSW = 0.0537
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G38030 | PredictedSynthetic Lethality | FSW = 0.0524
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G61010 | PredictedAffinity Capture-MS | FSW = 0.0160
| Unknown | ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) PROTEIN BINDING |
AT1G53570 | Predictedinterologs mapping | FSW = 0.0155
| Unknown | MAP3KA ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G11910 | Predictedtwo hybridCo-expression | FSW = 0.0170
| Unknown | UBP13 (UBIQUITIN-SPECIFIC PROTEASE 13) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT3G02040 | Predictedtwo hybrid | FSW = 0.0220
| Unknown | SRG3 (SENESCENCE-RELATED GENE 3) GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE/ PHOSPHORIC DIESTER HYDROLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454