Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT2G05520 - ( GRP-3 (GLYCINE-RICH PROTEIN 3) )

5 Proteins interacs with AT2G05520
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G21250

Experimental

pull down

molecular sieving

two hybrid

Reconstituted Complex

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.1684

Class B:

vacuole

unclear

peroxisome

golgi

Class D:

nucleus (p = 0.78)

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

WAK1 (CELL WALL-ASSOCIATED KINASE) KINASE
AT5G19280

Experimental

molecular sieving

Affinity Capture-Western

FSW = 0.0896

Class B:

plasma membrane

peroxisome

Class D:

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

KAPP (KINASE ASSOCIATED PROTEIN PHOSPHATASE) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN KINASE BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G21230

Experimental

pull down

Reconstituted Complex

FSW = 0.1233

Class D:

nucleus (p = 0.78)

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

WAK5 (WALL ASSOCIATED KINASE 5) KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G21240

Experimental

pull down

Reconstituted Complex

FSW = 0.1469

Class D:

extracellular (p = 0.86)

endoplasmic reticulum (p = 0.46)

WAK3 (WALL ASSOCIATED KINASE 3) KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G46090

Experimental

FSW = 0.0203

Unknown

ZAT7 NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454