Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G05630 - ( autophagy 8d (APG8d) )
26 Proteins interacs with AT2G05630Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G45170 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1957
| Class C:vacuolecytoskeleton | ATATG8E MICROTUBULE BINDING |
AT4G21980 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1744
| Class C:vacuolecytoskeleton | APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE |
AT4G16520 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4664
| Class C:vacuolecytoskeleton | ATG8F (AUTOPHAGY 8F) MICROTUBULE BINDING |
AT3G15580 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4500
| Class C:vacuolecytoskeleton | APG8H (AUTOPHAGY 8H) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE/ MICROTUBULE BINDING |
AT3G06420 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5000
| Class C:vacuolecytoskeleton | ATG8H (AUTOPHAGY 8H) MICROTUBULE BINDING |
AT3G60640 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4324
| Class C:vacuolecytoskeleton | ATG8G (AUTOPHAGY 8G) MICROTUBULE BINDING |
AT1G62040 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5828
| Class C:vacuolecytoskeleton | ATG8C (AUTOPHAGY 8C) MICROTUBULE BINDING |
AT4G04620 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4500
| Class C:vacuolecytoskeleton | ATG8B (AUTOPHAGY 8B) MICROTUBULE BINDING |
AT3G56190 | PredictedAffinity Capture-Western | FSW = 0.0272
| Class C:vacuole | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0077
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G11150 | Predictedinteraction prediction | FSW = 0.0545
| Class C:vacuole | ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713) |
AT1G11890 | Predictedinterologs mapping | FSW = 0.0314
| Unknown | SEC22 TRANSPORTER |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0101
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G12480 | Predictedbiochemical | FSW = 0.0056
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G18800 | Predictedinterologs mapping | FSW = 0.0043
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT5G56290 | Predictedtwo hybridtwo hybrid | FSW = 0.0512
| Unknown | PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING |
AT2G28910 | Predictedtwo hybridtwo hybrid | FSW = 0.0462
| Unknown | CXIP4 (CAX INTERACTING PROTEIN 4) NUCLEIC ACID BINDING / ZINC ION BINDING |
AT2G15430 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT5G46750 | Predictedtwo hybrid | FSW = 0.0860
| Unknown | AGD9 (ARF-GAP DOMAIN 9) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT5G61970 | Predictedtwo hybridtwo hybrid | FSW = 0.0571
| Unknown | SIGNAL RECOGNITION PARTICLE-RELATED / SRP-RELATED |
AT1G09270 | PredictedAffinity Capture-MS | FSW = 0.0063
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT2G37840 | Predictedbiochemical | FSW = 0.0158
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G59950 | Predictedinteraction predictiontwo hybridReconstituted Complextwo hybridAffinity Capture-Westerninterologs mappinginterologs mapping | FSW = 0.0315
| Unknown | AUTOPHAGY 4B (APG4B) |
AT5G45900 | Predictedinteraction predictionAffinity Capture-Westerntwo hybridtwo hybridtwo hybridAffinity Capture-Westerninterologs mapping | FSW = 0.1678
| Unknown | APG7 (AUTOPHAGY 7) APG8 ACTIVATING ENZYME |
AT5G61500 | Predictedinteraction predictionAffinity Capture-WesternReconstituted Complextwo hybridinterologs mapping | FSW = 0.2106
| Unknown | ATG3 |
AT4G17890 | Predictedtwo hybrid | FSW = 0.1091
| Unknown | AGD8 (ARF-GAP DOMAIN 8) ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454