Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G05840 - ( PAA2 (20S PROTEASOME SUBUNIT PAA2) endopeptidase/ peptidase/ threonine-type endopeptidase )
55 Proteins interacs with AT2G05840Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G25490 | Experimentalbiochemical | FSW = 0.1806
| Class D:mitochondrion (p = 0.82)cytosol (p = 0.67) | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G21720 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3263
| Unknown | PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G09590 | PredictedPhenotypic Suppression | FSW = 0.0257
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G51260 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternPhylogenetic profile method | FSW = 0.4174
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G66140 | PredictedPhylogenetic profile method | FSW = 0.2824
| Unknown | PAD2 (PROTEASOME ALPHA SUBUNIT D 2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G36530 | Predictedbiochemical | FSW = 0.0159
| Unknown | LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE |
AT1G07810 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0909
| Unknown | ECA1 (ER-TYPE CA2+-ATPASE 1) CALCIUM-TRANSPORTING ATPASE |
AT3G22630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2203
| Unknown | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G53850 | PredictedAffinity Capture-MSPhylogenetic profile method | FSW = 0.4091
| Unknown | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G27020 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridGene neighbors methodPhylogenetic profile method | FSW = 0.3761
| Unknown | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G22110 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhylogenetic profile method | FSW = 0.1753
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G35590 | PredictedGene fusion methodPhylogenetic profile method | FSW = 0.5323
| Unknown | PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G31300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3693
| Unknown | PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G60820 | PredictedAffinity Capture-MS | FSW = 0.3571
| Unknown | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G23940 | PredictedAffinity Capture-MS | FSW = 0.0187
| Unknown | DEHYDRATASE FAMILY |
AT1G75330 | PredictedAffinity Capture-MS | FSW = 0.0678
| Unknown | OTC (ORNITHINE CARBAMOYLTRANSFERASE) AMINO ACID BINDING / CARBOXYL- OR CARBAMOYLTRANSFERASE/ ORNITHINE CARBAMOYLTRANSFERASE |
AT1G06380 | PredictedAffinity Capture-Western | FSW = 0.0180
| Unknown | RIBOSOMAL PROTEIN-RELATED |
ATCG00160 | PredictedAffinity Capture-MS | FSW = 0.0024
| Unknown | CHLOROPLAST RIBOSOMAL PROTEIN S2 |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.0296
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT5G42790 | PredictedPhylogenetic profile method | FSW = 0.3182
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G04810 | PredictedAffinity Capture-MS | FSW = 0.0889
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT1G47250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhylogenetic profile method | FSW = 0.4432
| Unknown | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G10430 | PredictedAffinity Capture-MS | FSW = 0.1514
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G19990 | PredictedSynthetic RescueSynthetic RescueSynthetic Rescue | FSW = 0.0592
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT5G41370 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0816
| Unknown | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT5G07630 | PredictedAffinity Capture-MS | FSW = 0.0379
| Unknown | LIPID TRANSPORTER |
AT3G54840 | PredictedPhenotypic Suppression | FSW = 0.0227
| Unknown | ARA6 GTP BINDING / GTPASE |
AT2G38960 | Predictedbiochemical | FSW = 0.0261
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT1G16470 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhylogenetic profile method | FSW = 0.3650
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G13060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3720
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G14290 | PredictedPhylogenetic profile method | FSW = 0.2264
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G17190 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0337
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G23460 | PredictedPhenotypic Suppression | FSW = 0.0181
| Unknown | POLYGALACTURONASE |
AT1G29970 | PredictedPhenotypic Suppression | FSW = 0.0352
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT2G47760 | PredictedAffinity Capture-MS | FSW = 0.1400
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT3G21460 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0347
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT2G37670 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0968
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT2G44065 | PredictedPhenotypic Suppression | FSW = 0.0242
| Unknown | RIBOSOMAL PROTEIN L2 FAMILY PROTEIN |
AT3G48150 | PredictedAffinity Capture-RNA | FSW = 0.0127
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
AT4G33070 | PredictedAffinity Capture-RNA | FSW = 0.0260
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT5G07070 | PredictedAffinity Capture-MS | FSW = 0.0125
| Unknown | CIPK2 (CBL-INTERACTING PROTEIN KINASE 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G24840 | PredictedAffinity Capture-RNA | FSW = 0.0192
| Unknown | TRNA (GUANINE-N7-)-METHYLTRANSFERASE |
AT5G41190 | PredictedAffinity Capture-RNA | FSW = 0.0268
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G57330 | PredictedAffinity Capture-RNA | FSW = 0.0443
| Unknown | ALDOSE 1-EPIMERASE FAMILY PROTEIN |
AT1G05620 | PredictedAffinity Capture-MS | FSW = 0.0307
| Unknown | URH2 (URIDINE-RIBOHYDROLASE 2) HYDROLASE |
AT3G45740 | PredictedAffinity Capture-MS | FSW = 0.0593
| Unknown | HYDROLASE FAMILY PROTEIN / HAD-SUPERFAMILY PROTEIN |
AT3G27430 | PredictedAffinity Capture-MS | FSW = 0.3622
| Unknown | PBB1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G56450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3756
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G27470 | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | TRANSDUCIN-RELATED / WD-40 REPEAT PROTEIN-RELATED |
AT5G19820 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0445
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G09900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1400
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT4G38630 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0720
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0324
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G06740 | Predictedtwo hybrid | FSW = 0.0345
| Unknown | ZINC FINGER (GATA TYPE) FAMILY PROTEIN |
AT1G79210 | PredictedPhylogenetic profile method | FSW = 0.2410
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454