Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G06040 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 17 plant structures EXPRESSED DURING 10 growth stages CONTAINS InterPro DOMAIN/s Leucine-rich repeat cysteine-containing subtype (InterProIPR006553) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT5G219001) Has 3642 Blast hits to 1885 proteins in 175 species Archae - 0 Bacteria - 109 Metazoa - 2066 Fungi - 492 Plants - 697 Viruses - 0 Other Eukaryotes - 278 (source NCBI BLink) )
23 Proteins interacs with AT2G06040Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63400 | Predictedbiochemical | FSW = 0.0186
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT5G16630 | Predictedtwo hybridAffinity Capture-Westernbiochemical | FSW = 0.0857
| Unknown | RAD4 DAMAGED DNA BINDING |
AT4G35800 | PredictedPhenotypic Enhancement | FSW = 0.0416
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0032
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G16980 | PredictedPhenotypic Enhancement | FSW = 0.0479
| Unknown | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT5G27720 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0269
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT1G05120 | PredictedCo-purificationAffinity Capture-Westerntwo hybridAffinity Capture-WesternCo-purificationAffinity Capture-WesternCo-purificationco-fractionationCo-fractionationAffinity Capture-MSReconstituted Complex | FSW = 0.1481
| Unknown | SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN |
AT2G18760 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1508
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G38470 | PredictedAffinity Capture-Western | FSW = 0.0800
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT1G07705 | PredictedPhenotypic Enhancement | FSW = 0.0392
| Unknown | TRANSCRIPTION REGULATOR |
AT1G08880 | PredictedAffinity Capture-MS | FSW = 0.0060
| Unknown | H2AXA DNA BINDING |
AT1G26830 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0363
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G66810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1143
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT2G02760 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.0306
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT1G24706 | PredictedPhenotypic Enhancement | FSW = 0.0417
| Unknown | UNKNOWN PROTEIN |
AT1G34460 | PredictedAffinity Capture-MS | FSW = 0.0234
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0271
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT5G59140 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSCo-purification | FSW = 0.0788
| Unknown | SKP1 FAMILY PROTEIN |
AT3G54380 | PredictedPhenotypic Enhancement | FSW = 0.0233
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT4G05320 | PredictedAffinity Capture-MS | FSW = 0.0263
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT5G09620 | PredictedPhenotypic Enhancement | FSW = 0.1910
| Unknown | OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN-CONTAINING PROTEIN |
AT5G11200 | PredictedPhenotypic Enhancement | FSW = 0.0586
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT5G37830 | PredictedAffinity Capture-MS | FSW = 0.0352
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454