Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G06040 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 17 plant structures EXPRESSED DURING 10 growth stages CONTAINS InterPro DOMAIN/s Leucine-rich repeat cysteine-containing subtype (InterProIPR006553) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT5G219001) Has 3642 Blast hits to 1885 proteins in 175 species Archae - 0 Bacteria - 109 Metazoa - 2066 Fungi - 492 Plants - 697 Viruses - 0 Other Eukaryotes - 278 (source NCBI BLink) )

23 Proteins interacs with AT2G06040
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G63400

Predicted

biochemical

FSW = 0.0186

Unknown

ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT5G16630

Predicted

two hybrid

Affinity Capture-Western

biochemical

FSW = 0.0857

Unknown

RAD4 DAMAGED DNA BINDING
AT4G35800

Predicted

Phenotypic Enhancement

FSW = 0.0416

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0032

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT3G16980

Predicted

Phenotypic Enhancement

FSW = 0.0479

Unknown

NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT5G27720

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0269

Unknown

EMB1644 (EMBRYO DEFECTIVE 1644)
AT1G05120

Predicted

Co-purification

Affinity Capture-Western

two hybrid

Affinity Capture-Western

Co-purification

Affinity Capture-Western

Co-purification

co-fractionation

Co-fractionation

Affinity Capture-MS

Reconstituted Complex

FSW = 0.1481

Unknown

SNF2 DOMAIN-CONTAINING PROTEIN / HELICASE DOMAIN-CONTAINING PROTEIN / RING FINGER DOMAIN-CONTAINING PROTEIN
AT2G18760

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.1508

Unknown

CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G38470

Predicted

Affinity Capture-Western

FSW = 0.0800

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT1G07705

Predicted

Phenotypic Enhancement

FSW = 0.0392

Unknown

TRANSCRIPTION REGULATOR
AT1G08880

Predicted

Affinity Capture-MS

FSW = 0.0060

Unknown

H2AXA DNA BINDING
AT1G26830

Predicted

Affinity Capture-Western

Co-purification

FSW = 0.0363

Unknown

ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G66810

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1143

Unknown

ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT2G02760

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.0306

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT1G24706

Predicted

Phenotypic Enhancement

FSW = 0.0417

Unknown

UNKNOWN PROTEIN
AT1G34460Predicted

Affinity Capture-MS

FSW = 0.0234

Unknown

CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G31020

Predicted

Affinity Capture-MS

FSW = 0.0271

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT5G59140

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Co-purification

FSW = 0.0788

Unknown

SKP1 FAMILY PROTEIN
AT3G54380

Predicted

Phenotypic Enhancement

FSW = 0.0233

Unknown

SAC3/GANP FAMILY PROTEIN
AT4G05320

Predicted

Affinity Capture-MS

FSW = 0.0263

Unknown

UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING
AT5G09620

Predicted

Phenotypic Enhancement

FSW = 0.1910

Unknown

OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN-CONTAINING PROTEIN
AT5G11200

Predicted

Phenotypic Enhancement

FSW = 0.0586

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G37830

Predicted

Affinity Capture-MS

FSW = 0.0352

Unknown

OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454