Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G06210 - ( ELF8 (EARLY FLOWERING 8) binding )

67 Proteins interacs with AT2G06210
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G43900

Predicted

interaction prediction

FSW = 0.0096

Class C:

nucleus

MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR
AT2G44680

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Enhancement

interaction prediction

FSW = 0.1194

Class C:

nucleus

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT4G10710

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Co-expression

FSW = 0.1674

Class C:

nucleus

SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT4G10670

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1386

Class C:

nucleus

GTC2
AT4G31720

Predicted

Affinity Capture-MS

FSW = 0.0199

Class C:

nucleus

TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR
AT5G18620

Predicted

Phenotypic Enhancement

FSW = 0.0336

Class C:

nucleus

CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT4G30860

Predicted

Affinity Capture-Western

FSW = 0.0307

Class C:

nucleus

SDG4 (SET DOMAIN GROUP 4) HISTONE METHYLTRANSFERASE
AT2G18760

Predicted

Phenotypic Suppression

FSW = 0.0443

Class C:

nucleus

CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G27470

Predicted

Phenotypic Enhancement

FSW = 0.0779

Class C:

nucleus

NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) TRANSCRIPTION FACTOR
AT4G08350

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1013

Class C:

nucleus

GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT2G34210

Predicted

Affinity Capture-MS

FSW = 0.0995

Class C:

nucleus

STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT3G22630

Predicted

Affinity Capture-MS

FSW = 0.0652

Unknown

PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G45130

Predicted

Phenotypic Enhancement

FSW = 0.0275

Unknown

RHA1 (RAB HOMOLOG 1) GTP BINDING
AT3G22110

Predicted

Phenotypic Enhancement

FSW = 0.0742

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G14800

Predicted

Affinity Capture-MS

FSW = 0.0600

Unknown

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G35800

Predicted

Affinity Capture-Western

Synthetic Lethality

interaction prediction

Co-expression

FSW = 0.1581

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G23630

Predicted

Phenotypic Enhancement

FSW = 0.0557

Unknown

ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN
AT1G11890

Predicted

Phenotypic Enhancement

FSW = 0.0907

Unknown

SEC22 TRANSPORTER
AT1G53750

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0340

Unknown

RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE
AT3G18524

Predicted

Phenotypic Suppression

FSW = 0.0263

Unknown

MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT5G19180

Predicted

Phenotypic Suppression

FSW = 0.0442

Unknown

ECR1 (E1 C-TERMINAL RELATED 1) NEDD8 ACTIVATING ENZYME/ PROTEIN HETERODIMERIZATION/ SMALL PROTEIN ACTIVATING ENZYME
AT5G66020

Predicted

Phenotypic Enhancement

FSW = 0.0729

Unknown

ATSAC1B (SUPPRESSOR OF ACTIN 1B) PHOSPHATIDYLINOSITOL-45-BISPHOSPHATE 5-PHOSPHATASE
AT1G13060

Predicted

interaction prediction

FSW = 0.0467

Unknown

PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G28730

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-expression

FSW = 0.1581

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT2G22310

Predicted

Phenotypic Suppression

FSW = 0.0169

Unknown

ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE
AT5G03730

Predicted

in vitro

FSW = 0.0027

Unknown

CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT5G60570

Predicted

two hybrid

FSW = 0.0127

Unknown

KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT1G08780

Predicted

Phenotypic Suppression

FSW = 0.1092

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G29990

Predicted

Phenotypic Suppression

FSW = 0.0786

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G34150

Predicted

Phenotypic Suppression

FSW = 0.0725

Unknown

TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G49540

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1511

Unknown

NUCLEOTIDE BINDING
AT1G51310

Predicted

Phenotypic Suppression

FSW = 0.1140

Unknown

TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
AT1G51710

Predicted

Phenotypic Enhancement

FSW = 0.0647

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G54320

Predicted

Phenotypic Suppression

FSW = 0.0152

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT1G61040

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Synthetic Rescue

interaction prediction

FSW = 0.3222

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G79730

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.5198

Unknown

ELF7 (EARLY FLOWERING 7)
AT1G04160

Predicted

Affinity Capture-MS

FSW = 0.0267

Unknown

XIB (MYOSIN XI B) MOTOR
AT2G23070

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Suppression

interaction prediction

FSW = 0.1088

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT2G44150

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.0952

Unknown

ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT3G09100

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0936

Unknown

MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G22590

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2357

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G24030

Predicted

Phenotypic Suppression

FSW = 0.0494

Unknown

HYDROXYETHYLTHIAZOLE KINASE FAMILY PROTEIN
AT5G10270

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.0704

Unknown

CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G50320

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1528

Unknown

ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G58410

Predicted

synthetic growth defect

FSW = 0.1531

Unknown

BINDING / PROTEIN BINDING / ZINC ION BINDING
AT5G61150

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2741

Unknown

VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT2G18600

Predicted

Phenotypic Suppression

FSW = 0.0721

Unknown

RUB1-CONJUGATING ENZYME PUTATIVE
AT2G28360

Predicted

Phenotypic Suppression

FSW = 0.0207

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK)
AT3G04710

Predicted

Phenotypic Suppression

FSW = 0.0178

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT3G18860

Predicted

Phenotypic Enhancement

FSW = 0.0659

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G22480

Predicted

Phenotypic Suppression

FSW = 0.0752

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G55380

Predicted

Phenotypic Suppression

FSW = 0.0443

Unknown

UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE
AT4G33100

Predicted

Phenotypic Suppression

FSW = 0.0968

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MITOCHONDRIAL DISTRIBUTION AND MORPHOLOGY FAMILY 35/APOPTOSIS (INTERPROIPR007918) HAS 160 BLAST HITS TO 160 PROTEINS IN 70 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 46 PLANTS - 13 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK)
AT4G38630

Predicted

Phenotypic Enhancement

FSW = 0.0682

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G10260

Predicted

Phenotypic Enhancement

FSW = 0.1317

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G26680

Predicted

Phenotypic Suppression

FSW = 0.0534

Unknown

ENDONUCLEASE PUTATIVE
AT5G48120

Predicted

Phenotypic Enhancement

FSW = 0.0923

Unknown

BINDING
AT5G55310

Predicted

Phenotypic Enhancement

FSW = 0.0785

Unknown

TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT5G58003

Predicted

synthetic growth defect

FSW = 0.1140

Unknown

CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE
AT5G61770

Predicted

Phenotypic Enhancement

FSW = 0.0478

Unknown

PPAN (PETER PAN-LIKE PROTEIN)
AT5G65180

Predicted

Phenotypic Enhancement

FSW = 0.0765

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)
AT2G23080

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0843

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT1G20320

Predicted

synthetic growth defect

FSW = 0.1832

Unknown

NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN
AT1G74510

Predicted

two hybrid

FSW = 0.0327

Unknown

KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT3G47810

Predicted

two hybrid

interaction prediction

FSW = 0.0671

Unknown

MAG1 (MAIGO 1) HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G67380

Predicted

interaction prediction

FSW = 0.0376

Unknown

CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT4G13650

Predicted

Gene fusion method

FSW = 0.0254

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454