Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G07640 - ( D2D4-dienoyl-CoA reductase-related )
27 Proteins interacs with AT2G07640Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0117
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G20390 | PredictedAffinity Capture-MS | FSW = 0.0263
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT4G26970 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1570
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT5G47510 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.1059
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G22120 | PredictedAffinity Capture-MS | FSW = 0.0995
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G66410 | PredictedReconstituted Complex | FSW = 0.0027
| Unknown | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT5G39950 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | ATTRX2 (THIOREDOXIN 2) OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT1G34065 | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.0948
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT1G72480 | PredictedAffinity Capture-MS | FSW = 0.0659
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT3G57240 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2106
| Unknown | BG3 (BETA-13-GLUCANASE 3) CELLULASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT2G03410 | PredictedAffinity Capture-MS | FSW = 0.1037
| Unknown | MO25 FAMILY PROTEIN |
AT3G45590 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Western | FSW = 0.1647
| Unknown | ATSEN1 (SPLICING ENDONUCLEASE 1) NUCLEASE/ NUCLEIC ACID BINDING / TRNA-INTRON ENDONUCLEASE |
AT4G04210 | PredictedAffinity Capture-MS | FSW = 0.0155
| Unknown | PUX4 PROTEIN BINDING |
AT4G19880 | PredictedPhenotypic Enhancement | FSW = 0.0270
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK) |
AT2G43360 | PredictedAffinity Capture-MS | FSW = 0.0903
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT3G03590 | PredictedAffinity Capture-MS | FSW = 0.0281
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT3G11900 | PredictedAffinity Capture-MS | FSW = 0.1147
| Unknown | ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT3G57470 | PredictedAffinity Capture-MS | FSW = 0.0324
| Unknown | PEPTIDASE M16 FAMILY PROTEIN / INSULINASE FAMILY PROTEIN |
AT3G59410 | PredictedAffinity Capture-MS | FSW = 0.0833
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G25150 | PredictedAffinity Capture-MS | FSW = 0.0375
| Unknown | ACID PHOSPHATASE PUTATIVE |
AT5G06150 | PredictedAffinity Capture-MS | FSW = 0.0098
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.0658
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G24670 | PredictedAffinity Capture-MS | FSW = 0.0252
| Unknown | CATALYTIC/ HYDROLASE/ ZINC ION BINDING |
AT5G37830 | PredictedAffinity Capture-MS | FSW = 0.0308
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.0652
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT1G64610 | Predictedtwo hybrid | FSW = 0.0593
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454