Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G07640 - ( D2D4-dienoyl-CoA reductase-related )

27 Proteins interacs with AT2G07640
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0117

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT3G20390

Predicted

Affinity Capture-MS

FSW = 0.0263

Unknown

ENDORIBONUCLEASE L-PSP FAMILY PROTEIN
AT4G26970

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1570

Unknown

ACONITATE HYDRATASE/ COPPER ION BINDING
AT5G47510

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.1059

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT4G22120

Predicted

Affinity Capture-MS

FSW = 0.0995

Unknown

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT1G66410

Predicted

Reconstituted Complex

FSW = 0.0027

Unknown

CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER
AT5G39950

Predicted

Affinity Capture-MS

FSW = 0.0333

Unknown

ATTRX2 (THIOREDOXIN 2) OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT1G34065

Predicted

Affinity Capture-MS

FSW = 0.0417

Unknown

SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING
AT3G10920

Predicted

Affinity Capture-MS

FSW = 0.0948

Unknown

MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT1G72480

Predicted

Affinity Capture-MS

FSW = 0.0659

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN GOLGI APPARATUS EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G010701) HAS 422 BLAST HITS TO 420 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 208 FUNGI - 101 PLANTS - 83 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK)
AT3G57240

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2106

Unknown

BG3 (BETA-13-GLUCANASE 3) CELLULASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT2G03410

Predicted

Affinity Capture-MS

FSW = 0.1037

Unknown

MO25 FAMILY PROTEIN
AT3G45590

Predicted

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-Western

FSW = 0.1647

Unknown

ATSEN1 (SPLICING ENDONUCLEASE 1) NUCLEASE/ NUCLEIC ACID BINDING / TRNA-INTRON ENDONUCLEASE
AT4G04210

Predicted

Affinity Capture-MS

FSW = 0.0155

Unknown

PUX4 PROTEIN BINDING
AT4G19880

Predicted

Phenotypic Enhancement

FSW = 0.0270

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK)
AT2G43360

Predicted

Affinity Capture-MS

FSW = 0.0903

Unknown

BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE
AT3G03590

Predicted

Affinity Capture-MS

FSW = 0.0281

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT3G11900

Predicted

Affinity Capture-MS

FSW = 0.1147

Unknown

ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER
AT3G57470

Predicted

Affinity Capture-MS

FSW = 0.0324

Unknown

PEPTIDASE M16 FAMILY PROTEIN / INSULINASE FAMILY PROTEIN
AT3G59410

Predicted

Affinity Capture-MS

FSW = 0.0833

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G25150

Predicted

Affinity Capture-MS

FSW = 0.0375

Unknown

ACID PHOSPHATASE PUTATIVE
AT5G06150

Predicted

Affinity Capture-MS

FSW = 0.0098

Unknown

CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G19820

Predicted

Affinity Capture-MS

FSW = 0.0658

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE
AT5G24670

Predicted

Affinity Capture-MS

FSW = 0.0252

Unknown

CATALYTIC/ HYDROLASE/ ZINC ION BINDING
AT5G37830

Predicted

Affinity Capture-MS

FSW = 0.0308

Unknown

OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE
AT5G54200

Predicted

Affinity Capture-MS

FSW = 0.0652

Unknown

WD-40 REPEAT FAMILY PROTEIN
AT1G64610

Predicted

two hybrid

FSW = 0.0593

Unknown

WD-40 REPEAT FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454