Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G07690 - ( minichromosome maintenance family protein / MCM family protein )
41 Proteins interacs with AT2G07690Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G49240 | PredictedAffinity Capture-MS | FSW = 0.0370
| Unknown | ACT8 (ACTIN 8) COPPER ION BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G06510 | PredictedColocalization | FSW = 0.0742
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT1G11320 | Predictedtwo hybrid | FSW = 0.0096
| Unknown | UNKNOWN PROTEIN |
AT1G09770 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0273
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G40550 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0404
| Unknown | ETG1 (E2F TARGET GENE 1) |
AT4G35800 | PredictedSynthetic Rescue | FSW = 0.0093
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G12110 | PredictedAffinity Capture-MS | FSW = 0.0457
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G12480 | Predictedbiochemical | FSW = 0.0080
| Unknown | CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G15680 | Predictedtwo hybridtwo hybrid | FSW = 0.0110
| Unknown | BINDING |
AT3G43810 | PredictedAffinity Capture-MS | FSW = 0.0228
| Unknown | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G66410 | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT2G24490 | Predictedtwo hybrid | FSW = 0.0507
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT3G02920 | Predictedtwo hybrid | FSW = 0.1384
| Unknown | REPLICATION PROTEIN-RELATED |
AT1G24310 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0083
| Unknown | UNKNOWN PROTEIN |
AT1G44900 | Predictedtwo hybridColocalizationco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerntwo hybridAffinity Capture-MSAffinity Capture-WesternColocalizationco-fractionationCo-fractionationinteraction predictionCo-expression | FSW = 0.3375
| Unknown | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT5G54910 | PredictedSynthetic RescueSynthetic RescueCo-expression | FSW = 0.0125
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT4G02060 | Predictedinteraction predictiontwo hybridin vivoin vivoco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-purificationCo-purificationAffinity Capture-MStwo hybridin vivoAffinity Capture-MSco-fractionationCo-purificationAffinity Capture-Westerninterologs mappinginteraction predictionPhylogenetic profile methodCo-expression | FSW = 0.2800
| Unknown | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G05520 | PredictedAffinity Capture-MS | FSW = 0.0709
| Unknown | F-ACTIN CAPPING PROTEIN ALPHA SUBUNIT FAMILY PROTEIN |
AT1G26840 | Predictedtwo hybrid | FSW = 0.1905
| Unknown | ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6) DNA BINDING |
AT2G37560 | Predictedsynthetic growth defecttwo hybridCo-expression | FSW = 0.2127
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT3G25100 | PredictedSynthetic RescueAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternSynthetic Rescueinteraction predictionCo-expression | FSW = 0.1858
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT2G26060 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | EMB1345 (EMBRYO DEFECTIVE 1345) NUCLEOTIDE BINDING |
AT4G16970 | PredictedSynthetic RescueSynthetic Rescuetwo hybridbiochemicalSynthetic Rescue | FSW = 0.1592
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G32990 | PredictedAffinity Capture-MS | FSW = 0.0504
| Unknown | NUCLEOTIDE BINDING |
AT5G46280 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridtwo hybridin vivoin vivoin vitroin vitrointerologs mappinginterologs mappingColocalizationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerninterologs mappingPhylogenetic profile methodCo-expression | FSW = 0.2635
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT4G12620 | PredictedAffinity Capture-MS | FSW = 0.2452
| Unknown | ORC1B (ORIGIN OF REPLICATION COMPLEX 1B) DNA BINDING / DOUBLE-STRANDED METHYLATED DNA BINDING / PROTEIN BINDING |
AT1G04160 | PredictedAffinity Capture-MS | FSW = 0.0541
| Unknown | XIB (MYOSIN XI B) MOTOR |
AT1G04730 | Predictedinterologs mappingCo-expression | FSW = 0.0332
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G07270 | PredictedColocalizationColocalization | FSW = 0.0742
| Unknown | CELL DIVISION CONTROL PROTEIN CDC6B PUTATIVE (CDC6B) |
AT1G71790 | PredictedAffinity Capture-MS | FSW = 0.0318
| Unknown | F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN |
AT1G79150 | Predictedinterologs mappinginterologs mappingAffinity Capture-WesternCo-expression | FSW = 0.0253
| Unknown | BINDING |
AT1G67190 | PredictedAffinity Capture-MS | FSW = 0.0219
| Unknown | F-BOX FAMILY PROTEIN |
AT2G20980 | PredictedSynthetic Rescue | FSW = 0.3137
| Unknown | MCM10 |
AT5G44635 | PredictedAffinity Capture-MSAffinity Capture-Westerninteraction prediction | FSW = 0.1862
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT5G49010 | PredictedAffinity Capture-MS | FSW = 0.1943
| Unknown | SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) |
AT2G33240 | PredictedAffinity Capture-MS | FSW = 0.0851
| Unknown | XID MOTOR/ PROTEIN BINDING |
AT4G36080 | Predictedinterologs mapping | FSW = 0.0104
| Unknown | FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN |
AT2G16440 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.4013
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT2G17930 | Predictedinterologs mapping | FSW = 0.0107
| Unknown | BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR |
AT3G09660 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2308
| Unknown | MCM8 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G28370 | PredictedGene fusion method | FSW = 0.0364
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454