Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT2G07698 - ( ATP synthase alpha chain mitochondrial putative )

23 Proteins interacs with AT2G07698
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G08670

Predicted

Co-purification

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Enriched domain pair

FSW = 0.2231

Class C:

vacuole

plastid

mitochondrion

ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM
AT2G33040

Predicted

interaction prediction

Enriched domain pair

FSW = 0.1014

Class C:

plastid

nucleus

mitochondrion

ATP SYNTHASE GAMMA CHAIN MITOCHONDRIAL (ATPC)
AT2G07741

Predicted

Affinity Capture-Western

Affinity Capture-Western

interaction prediction

FSW = 0.1735

Class C:

nucleus

ATPASE SUBUNIT 6 PUTATIVE
AT5G03415

Predicted

Phenotypic Suppression

Phenotypic Suppression

FSW = 0.0430

Class C:

nucleus

DPB PROTEIN BINDING / PROTEIN HETERODIMERIZATION
AT2G07671

Predicted

Affinity Capture-Western

Affinity Capture-Western

interaction prediction

FSW = 0.0889

Class C:

nucleus

H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN
AT5G22220

Predicted

Phenotypic Suppression

FSW = 0.0401

Class C:

nucleus

E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT2G41620

Predicted

two hybrid

FSW = 0.0362

Class C:

nucleus

NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN
AT5G02470

Predicted

Phenotypic Suppression

FSW = 0.0580

Class C:

nucleus

DPA TRANSCRIPTION FACTOR
AT5G13450

Predicted

interaction prediction

FSW = 0.1194

Class C:

mitochondrion

ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE
AT5G40660

Predicted

two hybrid

two hybrid

Affinity Capture-Western

interaction prediction

FSW = 0.1683

Class C:

mitochondrion

ATP12 PROTEIN-RELATED
AT5G47030

Predicted

interaction prediction

FSW = 0.1846

Class C:

mitochondrion

ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL
AT2G26140

Predicted

Synthetic Rescue

interologs mapping

FSW = 0.0833

Unknown

FTSH4 (FTSH PROTEASE 4) ATP-DEPENDENT PEPTIDASE/ ATPASE/ METALLOPEPTIDASE
AT5G62500

Predicted

two hybrid

FSW = 0.0280

Unknown

ATEB1B (END BINDING PROTEIN 1B) MICROTUBULE BINDING
AT3G14290

Predicted

two hybrid

FSW = 0.0143

Unknown

PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G57350

Predicted

two hybrid

two hybrid

FSW = 0.0362

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT LOCATED IN NUCLEAR PORE CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN INTERACTING COMPONENT NUP93/NIC96 (INTERPROIPR007231) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN (TAIRAT2G416201) HAS 234 BLAST HITS TO 230 PROTEINS IN 99 SPECIES ARCHAE - 0 BACTERIA - 3 METAZOA - 124 FUNGI - 76 PLANTS - 29 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK)
AT5G62600

Predicted

two hybrid

two hybrid

FSW = 0.0212

Unknown

TRANSPORTIN-SR-RELATED
AT3G58560

Predicted

synthetic growth defect

FSW = 0.0336

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT3G63150

Predicted

synthetic growth defect

FSW = 0.0351

Unknown

MIRO2 (MIRO-RELATED GTP-ASE 2) GTPASE/ CALCIUM ION BINDING
AT4G21110

Predicted

Affinity Capture-MS

FSW = 0.0256

Unknown

G10 FAMILY PROTEIN
AT5G10960

Predicted

synthetic growth defect

FSW = 0.0328

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT2G34050

Predicted

co-fractionation

Co-fractionation

interaction prediction

FSW = 0.2364

Unknown

INVOLVED IN PROTEIN COMPLEX ASSEMBLY LOCATED IN MITOCHONDRION CHLOROPLAST EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ATP11 (INTERPROIPR010591) HAS 224 BLAST HITS TO 224 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 87 FUNGI - 80 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 39 (SOURCE NCBI BLINK)
AT1G15920

Predicted

synthetic growth defect

FSW = 0.0500

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT2G32510

Predicted

two hybrid

FSW = 0.0345

Unknown

MAPKKK17 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454