Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G07698 - ( ATP synthase alpha chain mitochondrial putative )
23 Proteins interacs with AT2G07698Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G08670 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pair | FSW = 0.2231
| Class C:vacuoleplastidmitochondrion | ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM |
AT2G33040 | Predictedinteraction predictionEnriched domain pair | FSW = 0.1014
| Class C:plastidnucleusmitochondrion | ATP SYNTHASE GAMMA CHAIN MITOCHONDRIAL (ATPC) |
AT2G07741 | PredictedAffinity Capture-WesternAffinity Capture-Westerninteraction prediction | FSW = 0.1735
| Class C:nucleus | ATPASE SUBUNIT 6 PUTATIVE |
AT5G03415 | PredictedPhenotypic SuppressionPhenotypic Suppression | FSW = 0.0430
| Class C:nucleus | DPB PROTEIN BINDING / PROTEIN HETERODIMERIZATION |
AT2G07671 | PredictedAffinity Capture-WesternAffinity Capture-Westerninteraction prediction | FSW = 0.0889
| Class C:nucleus | H+-TRANSPORTING TWO-SECTOR ATPASE C SUBUNIT FAMILY PROTEIN |
AT5G22220 | PredictedPhenotypic Suppression | FSW = 0.0401
| Class C:nucleus | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT2G41620 | Predictedtwo hybrid | FSW = 0.0362
| Class C:nucleus | NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN |
AT5G02470 | PredictedPhenotypic Suppression | FSW = 0.0580
| Class C:nucleus | DPA TRANSCRIPTION FACTOR |
AT5G13450 | Predictedinteraction prediction | FSW = 0.1194
| Class C:mitochondrion | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE |
AT5G40660 | Predictedtwo hybridtwo hybridAffinity Capture-Westerninteraction prediction | FSW = 0.1683
| Class C:mitochondrion | ATP12 PROTEIN-RELATED |
AT5G47030 | Predictedinteraction prediction | FSW = 0.1846
| Class C:mitochondrion | ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL |
AT2G26140 | PredictedSynthetic Rescueinterologs mapping | FSW = 0.0833
| Unknown | FTSH4 (FTSH PROTEASE 4) ATP-DEPENDENT PEPTIDASE/ ATPASE/ METALLOPEPTIDASE |
AT5G62500 | Predictedtwo hybrid | FSW = 0.0280
| Unknown | ATEB1B (END BINDING PROTEIN 1B) MICROTUBULE BINDING |
AT3G14290 | Predictedtwo hybrid | FSW = 0.0143
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G57350 | Predictedtwo hybridtwo hybrid | FSW = 0.0362
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT LOCATED IN NUCLEAR PORE CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN INTERACTING COMPONENT NUP93/NIC96 (INTERPROIPR007231) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN (TAIRAT2G416201) HAS 234 BLAST HITS TO 230 PROTEINS IN 99 SPECIES ARCHAE - 0 BACTERIA - 3 METAZOA - 124 FUNGI - 76 PLANTS - 29 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
AT5G62600 | Predictedtwo hybridtwo hybrid | FSW = 0.0212
| Unknown | TRANSPORTIN-SR-RELATED |
AT3G58560 | Predictedsynthetic growth defect | FSW = 0.0336
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT3G63150 | Predictedsynthetic growth defect | FSW = 0.0351
| Unknown | MIRO2 (MIRO-RELATED GTP-ASE 2) GTPASE/ CALCIUM ION BINDING |
AT4G21110 | PredictedAffinity Capture-MS | FSW = 0.0256
| Unknown | G10 FAMILY PROTEIN |
AT5G10960 | Predictedsynthetic growth defect | FSW = 0.0328
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT2G34050 | Predictedco-fractionationCo-fractionationinteraction prediction | FSW = 0.2364
| Unknown | INVOLVED IN PROTEIN COMPLEX ASSEMBLY LOCATED IN MITOCHONDRION CHLOROPLAST EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ATP11 (INTERPROIPR010591) HAS 224 BLAST HITS TO 224 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 87 FUNGI - 80 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 39 (SOURCE NCBI BLINK) |
AT1G15920 | Predictedsynthetic growth defect | FSW = 0.0500
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT2G32510 | Predictedtwo hybrid | FSW = 0.0345
| Unknown | MAPKKK17 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454