Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G07741 - ( ATPase subunit 6 putative )

8 Proteins interacs with AT2G07741
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G47030

Experimental

FSW = 0.2857

Class B:

nucleus

mitochondrion

Class D:

plastid (p = 0.78)

ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL
AT2G07698

Predicted

Affinity Capture-Western

Affinity Capture-Western

interaction prediction

FSW = 0.1735

Class C:

nucleus

ATP SYNTHASE ALPHA CHAIN MITOCHONDRIAL PUTATIVE
AT5G08670

Predicted

interaction prediction

FSW = 0.1786

Unknown

ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM
AT5G13450

Predicted

interaction prediction

FSW = 0.1477

Unknown

ATP SYNTHASE DELTA CHAIN MITOCHONDRIAL PUTATIVE / H(+)-TRANSPORTING TWO-SECTOR ATPASE DELTA (OSCP) SUBUNIT PUTATIVE
AT2G46470

Predicted

Affinity Capture-Western

Affinity Capture-Western

FSW = 0.1429

Unknown

OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE)
AT4G19003

Predicted

Affinity Capture-Western

Affinity Capture-Western

FSW = 0.0373

Unknown

VPS25
AT4G22756

Predicted

co-fractionation

Co-fractionation

FSW = 0.0416

Unknown

SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC
AT5G04420

Predicted

Affinity Capture-Western

Affinity Capture-Western

FSW = 0.0519

Unknown

KELCH REPEAT-CONTAINING PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454