Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT2G13570 - ( NF-YB7 (NUCLEAR FACTOR Y SUBUNIT B7) transcription factor )

11 Proteins interacs with AT2G13570
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G08970

Predicted

Reconstituted Complex

Affinity Capture-MS

Reconstituted Complex

two hybrid

FSW = 0.2622

Class C:

nucleus

NF-YC9 (NUCLEAR FACTOR Y SUBUNIT C9) DNA BINDING / TRANSCRIPTION FACTOR
AT1G17590

Predicted

Affinity Capture-MS

Reconstituted Complex

two hybrid

FSW = 0.1498

Class C:

nucleus

NF-YA8 (NUCLEAR FACTOR Y SUBUNIT A8) TRANSCRIPTION FACTOR
AT5G44500

Predicted

Affinity Capture-MS

FSW = 0.0606

Class C:

nucleus

SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT1G78900

Predicted

Affinity Capture-MS

FSW = 0.0345

Unknown

VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G55810

Predicted

Affinity Capture-MS

FSW = 0.0220

Unknown

PYRUVATE KINASE PUTATIVE
AT3G10920

Predicted

Affinity Capture-MS

FSW = 0.0231

Unknown

MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT1G62880

Predicted

Affinity Capture-MS

FSW = 0.0738

Unknown

CORNICHON FAMILY PROTEIN
AT3G45590

Predicted

Affinity Capture-MS

FSW = 0.0800

Unknown

ATSEN1 (SPLICING ENDONUCLEASE 1) NUCLEASE/ NUCLEIC ACID BINDING / TRNA-INTRON ENDONUCLEASE
AT3G53510

Predicted

Affinity Capture-MS

FSW = 0.0851

Unknown

ABC TRANSPORTER FAMILY PROTEIN
AT5G46150

Predicted

Affinity Capture-MS

FSW = 0.0357

Unknown

LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN
AT1G29990

Predicted

Synthetic Lethality

FSW = 0.0350

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454