Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G14045 - ( unknown protein )

16 Proteins interacs with AT2G14045
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G11670

Predicted

two hybrid

FSW = 0.0482

Unknown

ATNADP-ME2 (NADP-MALIC ENZYME 2) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT5G56000

Predicted

two hybrid

FSW = 0.0333

Unknown

HEAT SHOCK PROTEIN 81-4 (HSP81-4)
AT1G17880

Predicted

two hybrid

FSW = 0.0312

Unknown

NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN / BTF3B-LIKE TRANSCRIPTION FACTOR PUTATIVE
AT4G19610Predicted

two hybrid

two hybrid

FSW = 0.0486

Unknown

RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G19760

Predicted

two hybrid

FSW = 0.0401

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE / DEAD BOX RNA HELICASE PUTATIVE
AT5G35530

Predicted

two hybrid

FSW = 0.0179

Unknown

40S RIBOSOMAL PROTEIN S3 (RPS3C)
AT1G01910

Predicted

two hybrid

FSW = 0.0156

Unknown

ANION-TRANSPORTING ATPASE PUTATIVE
AT4G00660

Predicted

two hybrid

FSW = 0.0162

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT5G12410

Predicted

two hybrid

FSW = 0.0168

Unknown

THUMP DOMAIN-CONTAINING PROTEIN
AT1G54590

Predicted

two hybrid

FSW = 0.1684

Unknown

SPLICING FACTOR PRP18 FAMILY PROTEIN
AT2G30330

Predicted

two hybrid

two hybrid

FSW = 0.0504

Unknown

GCN5L1 FAMILY PROTEIN
AT5G03560

Predicted

two hybrid

two hybrid

FSW = 0.0395

Unknown

NUCLEOBASECATION SYMPORTER
AT5G50130

Predicted

two hybrid

FSW = 0.0526

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT5G48630

Predicted

two hybrid

two hybrid

FSW = 0.0179

Unknown

CYCLIN FAMILY PROTEIN
AT1G27350Predicted

two hybrid

FSW = 0.0702

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S RIBOSOME ASSOCIATED MEMBRANE RAMP4 (INTERPROIPR010580) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G273301) HAS 267 BLAST HITS TO 267 PROTEINS IN 83 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 183 FUNGI - 0 PLANTS - 55 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK)
AT1G03140

Predicted

two hybrid

FSW = 0.0702

Unknown

SPLICING FACTOR PRP18 FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454